View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128-Insertion-9 (Length: 788)
Name: NF3128-Insertion-9
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 498
Target Start/End: Complemental strand, 5680849 - 5680358
Alignment:
| Q |
8 |
ccattcctgtttcatgttaataattttctttgctgtatcagtgtaccagccaatcactattnnnnnnnnnnngttgaattaacgacagaaattagagacg |
107 |
Q |
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| T |
5680849 |
ccattcctgtttcatgttaataattttctttgctgtatcagtgtacgagccaatcactattaaaaaaaaaaagttgaattaacgacggaaattagagacg |
5680750 |
T |
|
| Q |
108 |
tacaaaaaatgaaattagcccgcctctaacgttcatatgccactaattnnnnnnnttcaagtggtgcattgtaacacgaaattgcgaagtttgaaacc-g |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
5680749 |
tacaaaaaatgaaattagcccgcctctaacgttcatatgccactaaataaaaaaattcaagtagtgcattgtaacacgaaattgcgaagtttgaaacccg |
5680650 |
T |
|
| Q |
207 |
ttggagaaataaaattatctaattttacgttacctgaaagattattagcttcattgggtgkaagtaatgctgcaaagccattgaaagtgtgtttgtaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5680649 |
ttggagaaataaaattatctaattttacgttacctgaaagattattggcttcattaggtgtaagtaatgctgcaaagccattgaaagtgtgtttgtaact |
5680550 |
T |
|
| Q |
307 |
gtaaagatgggaagctcgagcttcatcctcagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccatta |
406 |
Q |
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| T |
5680549 |
gtaaagatgggaagctcgagcttcatcctcagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatctccttta |
5680450 |
T |
|
| Q |
407 |
atattgtgctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
498 |
Q |
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| T |
5680449 |
atattgttctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
5680358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 564 - 788
Target Start/End: Complemental strand, 5680292 - 5680068
Alignment:
| Q |
564 |
cctgattattattggtgcatgacaccaatggaagaaggaggaggaggaggaagagacatgttgtggaaatgatgatgttcattgccataggtgtagacaa |
663 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680292 |
cctgattattattggtgcatgacaccaatggaagaaggagcaggaggaggaagagacatgttgtggaaatgatgatgttcattgccataggtgtagacaa |
5680193 |
T |
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| Q |
664 |
aacgcaatttgatataatgtgttgatatttataaagggttaaaggttaattacacgaatctctaaccaatgtttaccctcatctcaagaatatgtctctt |
763 |
Q |
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| T |
5680192 |
aacgcaatttgatgtaatgtgatgatatttataaagggttaaaggttaattacacgaatctctaaccaatgtttaccctcatctcaagaatatgtctctt |
5680093 |
T |
|
| Q |
764 |
atctgattaaacgacaaaattttat |
788 |
Q |
| |
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| T |
5680092 |
atctgattaaacgacaaaattttat |
5680068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 236 - 450
Target Start/End: Complemental strand, 5689930 - 5689719
Alignment:
| Q |
236 |
ttacctgaaagattattagcttcattgggtgkaagtaatgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcct |
335 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||| |||||| ||||| | | |||||| |||| |
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| T |
5689930 |
ttacctgagagattattggcttcatttggtgtaagtaatgctgcaaaaccattgaaagtgtgtttataactataaagaagggaaaccctagcttcctcct |
5689831 |
T |
|
| Q |
336 |
cagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagata |
435 |
Q |
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| T |
5689830 |
cagtttcttttaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatgtccat---tattgtgctctccaaattccactagata |
5689734 |
T |
|
| Q |
436 |
aacctgtgagaaaat |
450 |
Q |
| |
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| T |
5689733 |
aacctgtgagaaaat |
5689719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 564 - 608
Target Start/End: Complemental strand, 5689642 - 5689598
Alignment:
| Q |
564 |
cctgattattattggtgcatgacaccaatggaagaaggaggagga |
608 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
5689642 |
cctgattatttttggtgcatgagaccaatggaagaaggagaagga |
5689598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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