View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128R-Insertion-1 (Length: 109)
Name: NF3128R-Insertion-1
Description: NF3128R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128R-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 4e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 33559944 - 33559843
Alignment:
| Q |
8 |
aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt |
107 |
Q |
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| T |
33559944 |
aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt |
33559845 |
T |
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| Q |
108 |
tg |
109 |
Q |
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|| |
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| T |
33559844 |
tg |
33559843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 5e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 39391420 - 39391518
Alignment:
| Q |
11 |
tccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatttg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||||||| ||||||| |
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| T |
39391420 |
tccttcattagagcacagctattcttcatttctgatattatatttatcgatttcttctttgtagactctaatttttctgcttcttcaccaattaatttg |
39391518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 39161411 - 39161310
Alignment:
| Q |
8 |
aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt |
107 |
Q |
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| T |
39161411 |
aattccttcattagagcacagctattcttcatttctgatattatatttattgacttcttccttgttgactctaatatttctgtttcttcactaattaatt |
39161312 |
T |
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| Q |
108 |
tg |
109 |
Q |
| |
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|| |
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| T |
39161311 |
tg |
39161310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 39207783 - 39207884
Alignment:
| Q |
8 |
aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||| ||||||||| | || | |||||||| || ||||| |
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| T |
39207783 |
aattccttcattagagcacagctattcttcatttctgatattatatttattgacttcttccttgttgactctaatatttctgtttcttcactaattaatt |
39207882 |
T |
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| Q |
108 |
tg |
109 |
Q |
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|| |
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| T |
39207883 |
tg |
39207884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 39199086 - 39199187
Alignment:
| Q |
8 |
aattccttcattagagcacagctattcttcatttctgatattatatgcatcgatttcttctttgcagactctaatttctccgcttcttcaccaactaatt |
107 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||||| | || |||||| || |||| ||||| || ||||| | |||||||| ||||| |
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| T |
39199086 |
aattccttcacttgagcaatactattcttcatttctgatattatatttagcgccttcttccttccagattctaacttttccgcctgttcaccaattaatt |
39199185 |
T |
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| Q |
108 |
tg |
109 |
Q |
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|| |
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| T |
39199186 |
tg |
39199187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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