View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128R-Insertion-5 (Length: 579)
Name: NF3128R-Insertion-5
Description: NF3128R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128R-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Original strand, 40786966 - 40787526
Alignment:
| Q |
17 |
ggtgtgcatatgaggtctttttacttataaaatttaatgaaaatttannnnnnngctctttgacctaaaacgaaggttttagttgccttacccttgagtc |
116 |
Q |
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| T |
40786966 |
ggtgtgcatatgaggtctttttacttataaaatttaatgaaaatttatttttttgctctttgacctaaaacgaaggttttagttgccttacccttgagtc |
40787065 |
T |
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| Q |
117 |
agtcatgttactcctattaggagaatcgtagctttgaannnnnnnnnnnnnnncataagacctaactttgaattgtaattttgaggttaagtatatttgg |
216 |
Q |
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| T |
40787066 |
agtcatgttactactattaggagaatcgtagctttaaatttttttcttttttt-ataagacctagctttgaattgtaattttgaggttaagtatatttgg |
40787164 |
T |
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| Q |
217 |
aggcatgtgaatatggttgatgactcgtttgctagagcagttattttttatattagtcatcaagtttatgattatggtactctttgtattcatcattctt |
316 |
Q |
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|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
40787165 |
aggcatttgaatatggttgatgactcattagctagagcagttattttttatattagtcatcaagtttatgattatggtactctttgtattcgtccttctt |
40787264 |
T |
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| Q |
317 |
tatgaaagnnnnnnnnnnctcgcgtaaatattattgatcacaattatatcgttcctttaaaacaactttcattttccaatataaatgtgctgatatgtag |
416 |
Q |
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| T |
40787265 |
tatgaaagaaaaaaaaa-ctcgcgtaaatattattgatcacaattatatcgttcctttaatacaactttcattttccaatataaatgtgctgatatgtag |
40787363 |
T |
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| Q |
417 |
agaatggacatttccaactttttatcaataaactaaagattcactagagattgtattaaatcacaacttctctctcccgtaaacttcatcatgttgaatc |
516 |
Q |
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| T |
40787364 |
agaatggacatttccaactttttatcaataaactaaagattcactagagattgtattaaatcacaacttctctctcccgtaaacttcatcattttgaata |
40787463 |
T |
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| Q |
517 |
acaagagattgtattagtttcacaggagttgtttgcctctgtaacaacaaagcttgtaaaggt |
579 |
Q |
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| T |
40787464 |
acaagagattgtattagtttcacaggagttgtttgcctctgtaacaacaaagcctgtaaaggt |
40787526 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 40852308 - 40852347
Alignment:
| Q |
24 |
atatgaggtctttttacttataaaatttaatgaaaattta |
63 |
Q |
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| T |
40852308 |
atatgaggtctttttacttgtaaaattaaatgaaaattta |
40852347 |
T |
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