View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128R-Insertion-6 (Length: 621)

Name: NF3128R-Insertion-6
Description: NF3128R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128R-Insertion-6
NF3128R-Insertion-6
[»] chr3 (1 HSPs)
chr3 (9-621)||(49944686-49945298)


Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 9 - 621
Target Start/End: Complemental strand, 49945298 - 49944686
Alignment:
Q  9 atatctacatgtaattagacgacaacgtttagaaagtgcatgttattccatttgcatcaaaacaagcaacacaatattcaccttgtcttgttcttttctt 108  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49945298 atatctacatgtaattaaacgacaacgtttagaaagtgcatgttattccatttgcatcaaaacaagcaacacaatattcaccttgtcttgttcttttctt 49945199  T
Q  109 cccacctttgaaaacaaaaaacaacaacattaacatacagctcaagttcgaatctcttcaaaccaaacaagttctcatttttcacactcaaaagtgacat 208  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49945198 cccacctttaaaaacaaaaaacaacaacattaacatacaattcaagttcgaatctcttcaaaacaaacaagttctcatttttcacactcaaaagtgacat 49945099  T
Q  209 cagaatggatcctaaaattctcagtttcctaaatgcagtagcacttcgttagggaactgagaaggagaagaagataatggacacctctttcttcggaatc 308  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49945098 cagaatggattctaaaattctcagtttcctaaatgcagtagcaattcgttagggaactgagaaggagaagaagataatgaacacctctttcttcggaatc 49944999  T
Q  309 aagcttcattcttctttcaaagtttacaacactatcactatcaatagtaacaatcatttggagttgttggagagaagaagattattgcagaaaagcaaaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49944998 aagcttcattcttctttcaaagtttacaacactatcactatcaatagtaacaatcatttggagttgttggagagaagaagattattgcagaaaagcaaaa 49944899  T
Q  409 ggtggtgcactgtatctgcgaaacatggacgcccaataaggcaagtttttagtttttgttgtcaaaatgtaaacttgttgaggatacaccatgtttccgt 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49944898 ggtggtgcactgtatctgcgaaacatggacgcccaataaggcaagtttttagtttttgttgtcaaaatgtaaacttgttgaggatacaccatgtttccgt 49944799  T
Q  509 aagtgggtctaggttgaaatgtactaataaagaatcacgcttttctcctttcttcactccattgtggaaagaagggannnnnnngatgagggtatgtgtt 608  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  49944798 aagtgggtctaggttgaaatgtactaatgaagaatcacgcttttctcctttcttcactccattgtggaaagaagggatttttttgatgagggtatgtgtt 49944699  T
Q  609 tacactgttgtta 621  Q
    |||||||||||||    
T  49944698 tacactgttgtta 49944686  T

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