View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_high_1 (Length: 1002)

Name: NF3128_high_1
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_high_1
NF3128_high_1
[»] chr5 (6 HSPs)
chr5 (416-988)||(7497998-7498564)
chr5 (17-276)||(7497556-7497816)
chr5 (308-362)||(7497851-7497905)
chr5 (384-452)||(28056382-28056450)
chr5 (46-93)||(7497500-7497547)
chr5 (404-452)||(4800521-4800570)
[»] chr2 (1 HSPs)
chr2 (404-451)||(43621968-43622015)
[»] scaffold0252 (1 HSPs)
scaffold0252 (410-452)||(8001-8043)
[»] chr4 (1 HSPs)
chr4 (369-407)||(24088521-24088559)
[»] chr8 (1 HSPs)
chr8 (411-452)||(40614217-40614258)
[»] chr7 (1 HSPs)
chr7 (411-452)||(47530318-47530359)
[»] chr3 (1 HSPs)
chr3 (417-469)||(12094422-12094475)
[»] chr1 (1 HSPs)
chr1 (404-465)||(34395939-34396000)


Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 416 - 988
Target Start/End: Original strand, 7497998 - 7498564
Alignment:
Q  416 caaaagttgtcatagagtagttgtataaatatcatttgtattttataaataaaatttatgctgccatttattattgaaatcctttttgcactttatctca 515  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7497998 caaaagttgtcatagagtagttgtataaatataatttctattttataa----aatttatgcggccatttattattgaaatcctttttgcactttatctca 7498093  T
Q  516 aaagcaaattaatttttatactcatacaacttagcggggtttcaggcagtggaaaattgagttgggcaaatgaagacggtactagcacaatcgatatacg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498094 aaagcaaattaatttttatactcatacaacttagcggggtttcaggcagtggaaaattgagttgggcaaatgaagacggtactagcacaatcgatatacg 7498193  T
Q  616 tgaaggagatgtaggaagtctcacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttacc 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498194 tgaaggagatgtaggaagtctcacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttacc 7498293  T
Q  716 aatactgatgatagcacatttgtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtttgaac 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  7498294 aatactgatgatagcacatttgtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtt--aac 7498391  T
Q  816 aaaaattgcaggatccatcaattggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataa 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498392 aaaaattgcaggatccatcaattggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataa 7498491  T
Q  916 tatgttcattcacaatgtgaaacaataaatgtatagttggttccattttgagccaaaattgttgagtgatttt 988  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  7498492 tatgttcattcacaatgtgaaacaatcaatgtatagttggttccattttgaggcaaaattgttgagtgatttt 7498564  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 7497556 - 7497816
Alignment:
Q  17 tcacatgagttcgaattcaggaccttatgaggactagtccttaaagtctaagatcactattttgaggctagacaccttcacctgaattcgaattaaggac 116  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7497556 tcacatgagttcgaattcaggatcttataaggaccagtccttaaagtctaagatcactattttgaggctagacaccttcacctgagttcgaattaaggac 7497655  T
Q  117 cttacagttgtgcaatnnnnnnnnnnnnnnnnnnnnnnttcatatagtctttaccacttcatgtaagacaacnnnnnnntggaggactaaaatccttaag 216  Q
    ||||||||||||||||                      ||||||||||||||||||||||||||||||||||       |||||||||||||||||||      
T  7497656 cttacagttgtgcaattgtgtgtgtgagttgtgtgtgtttcatatagtctttaccacttcatgtaagacaac-aaaaaatggaggactaaaatccttata 7497754  T
Q  217 ataagggaccactccttatta--tctactatattaaacagcttttcaaccaaaaatctcaac 276  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  7497755 ataagggaccacttcttattatctctactatattaaacagcttttcaaccaaaaatctcaac 7497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 7497851 - 7497905
Alignment:
Q  308 tatacattgtttttataaaaattaaaaagtaatgatgtttgtacaaccatttagt 362  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  7497851 tatacattgtttttataaaaattaaaaagtaatgatatttgtacaacaatttagt 7497905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 384 - 452
Target Start/End: Original strand, 28056382 - 28056450
Alignment:
Q  384 taaacacatgatgtgagtacgagatagttgttcaaaagttgtcatagagtagttgtataaatatcattt 452  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||| | ||||| ||  ||||||||||    
T  28056382 taaaaacatgatgtgagtacgagagagatgttcaaaagttatcataaaatagttttacgaatatcattt 28056450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 7497500 - 7497547
Alignment:
Q  46 aggactagtccttaaagtctaagatcactattttgaggctagacacct 93  Q
    ||||||||||||||||| || ||||||||||| | |||||||||||||    
T  7497500 aggactagtccttaaagcctgagatcactattcttaggctagacacct 7497547  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 4800521 - 4800570
Alignment:
Q  404 gagatagttgttc-aaaagttgtcatagagtagttgtataaatatcattt 452  Q
    |||| |||||||| ||||||||||| | ||||||||||||||||||||||    
T  4800521 gagagagttgttccaaaagttgtcaaaaagtagttgtataaatatcattt 4800570  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 43621968 - 43622015
Alignment:
Q  404 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcatt 451  Q
    |||| ||||||||||||||||||||| | |||||||| ||||||||||    
T  43621968 gagaaagttgttcaaaagttgtcataaaatagttgtacaaatatcatt 43622015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 8001 - 8043
Alignment:
Q  410 gttgttcaaaagttgtcatagagtagttgtataaatatcattt 452  Q
    |||||||||||||||||||| | | ||||||||||||||||||    
T  8001 gttgttcaaaagttgtcataaaatggttgtataaatatcattt 8043  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 369 - 407
Target Start/End: Original strand, 24088521 - 24088559
Alignment:
Q  369 aaggaaggaagagagtaaacacatgatgtgagtacgaga 407  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  24088521 aaggaagaaagagagtaaacacatgatgtgagtatgaga 24088559  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 40614217 - 40614258
Alignment:
Q  411 ttgttcaaaagttgtcatagagtagttgtataaatatcattt 452  Q
    |||||||||| || ||||| ||||||||||||||||||||||    
T  40614217 ttgttcaaaaattatcataaagtagttgtataaatatcattt 40614258  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 411 - 452
Target Start/End: Original strand, 47530318 - 47530359
Alignment:
Q  411 ttgttcaaaagttgtcatagagtagttgtataaatatcattt 452  Q
    ||||||||||||||||||| | | ||||||||||||||||||    
T  47530318 ttgttcaaaagttgtcataaaatggttgtataaatatcattt 47530359  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 12094422 - 12094475
Alignment:
Q  417 aaaagttgtcatagagtagttgtataaatatcatttgt-attttataaataaaa 469  Q
    |||| |||||||| | |||||||||||||||||||| | |||||||||||||||    
T  12094422 aaaaattgtcataaaatagttgtataaatatcatttctcattttataaataaaa 12094475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 465
Target Start/End: Original strand, 34395939 - 34396000
Alignment:
Q  404 gagatagttgttcaaaagttgtcatagagtagttgtataaatatcatttgtattttataaat 465  Q
    |||| ||||||||||||||||||||| | ||| |||| ||||||||||| |  |||||||||    
T  34395939 gagaaagttgttcaaaagttgtcataaaatagatgtacaaatatcatttatcctttataaat 34396000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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