View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_high_11 (Length: 409)
Name: NF3128_high_11
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 12312075 - 12312450
Alignment:
| Q |
17 |
agcagagagggtttgctacatttcttttcaaattgtagttctaataatttgcataaactcgattttcgtttacctatggaccttgaaaacaatcatctat |
116 |
Q |
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| T |
12312075 |
agcagagagggtttgctacatttcttttcaaattgtagttctaataatttgcataaactcgattttcgtttacctatggaccttgaaaacaatcatctat |
12312174 |
T |
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| Q |
117 |
ttgctattgctatgactacaaattttcgaggcctttcgagtattaggcttcaaagttgttgtcttgtaactggtgaagggcttaaggttctaagtgtagc |
216 |
Q |
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| T |
12312175 |
ttgctattgctatgactacaaattttcgaggcctttcgagtattaggcttcaaagttgttgtcttgtaactggtgaagggcttaaggttctaagtgtagc |
12312274 |
T |
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| Q |
217 |
aatgagtaatggtcttgaagaattggcactcataaattgtgatgttgttgaaagggaaaaaggtttgcttgctactttagggcaacatttgaggcaattg |
316 |
Q |
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| T |
12312275 |
attgagtaatggtcttgaagaattggcactcataaactgtgatgttgttgaaagggaaaaaggtttgcttgctactttagggcaacatttgaggcaattg |
12312374 |
T |
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| Q |
317 |
aagaaacttgatttgtctcataatgaaatgttgtttgataaggattttgtttcaatgttggtttcatgtattcatt |
392 |
Q |
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| T |
12312375 |
aagaaacttgatttgtctcataatgaaatgttgtttgataaggattttatttcaatgttggtttcatgtattcatt |
12312450 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 12235173 - 12235096
Alignment:
| Q |
53 |
agttctaataatttgcataaactcgattttcgtttacctatggaccttgaaaacaatcatctatttgctattgctatga |
131 |
Q |
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| T |
12235173 |
agttctaataatt-gcataaacttgattttcgattatccatggaccttgaataccatcatctattttatatggctatga |
12235096 |
T |
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