View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_high_13 (Length: 361)

Name: NF3128_high_13
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_high_13
NF3128_high_13
[»] chr7 (7 HSPs)
chr7 (1-291)||(10930757-10931041)
chr7 (82-182)||(12868462-12868562)
chr7 (57-137)||(13608571-13608646)
chr7 (106-176)||(24575860-24575930)
chr7 (82-138)||(12345583-12345639)
chr7 (108-163)||(31893785-31893840)
chr7 (106-183)||(22518370-22518447)
[»] chr3 (7 HSPs)
chr3 (1-187)||(7254903-7255088)
chr3 (1-188)||(41071458-41071639)
chr3 (57-185)||(51811114-51811236)
chr3 (88-173)||(7314065-7314149)
chr3 (120-163)||(37289837-37289880)
chr3 (120-162)||(2568924-2568966)
chr3 (108-150)||(35414370-35414412)
[»] chr8 (3 HSPs)
chr8 (2-80)||(6298454-6298532)
chr8 (106-188)||(16496055-16496137)
chr8 (85-137)||(1410630-1410682)
[»] chr5 (3 HSPs)
chr5 (88-188)||(24211521-24211621)
chr5 (126-161)||(30601408-30601443)
chr5 (118-199)||(20928659-20928740)
[»] chr4 (1 HSPs)
chr4 (88-183)||(48136306-48136400)
[»] chr1 (1 HSPs)
chr1 (106-185)||(34003216-34003295)
[»] chr2 (3 HSPs)
chr2 (86-162)||(15424621-15424697)
chr2 (118-185)||(26616045-26616112)
chr2 (120-183)||(14913450-14913513)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 10931041 - 10930757
Alignment:
Q  1 atgggagaaaattcgcaaaaaatgagtttgaaacacaatggttatgtttttgtctattgttgttctataacaacacgcaacgcaacatgagttaagtcac 100  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10931041 atgggagaaaattcgcaaaa--tgagtttgaaacacaatggttatgtttttgtctattgttgttctataacaacacgcaacgcaacgtgagttaagtcac 10930944  T
Q  101 attgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattcaattaagagtgagtgn 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||  | ||||| |||| |||||||| |||||||||||||     
T  10930943 attgtgtttacaaccttcgtgagttaactcacgctgaaagtatcgagcgtgacttaagtcacgcatgggtaatttcgtccattcagttaagagtgagtg- 10930845  T
Q  201 nnnnnnnnnnnnggaagaagaaaaattttcgcaaaattatgtttcatcaagaaatgatatgaggaaactaactcaacgttactttgtaagg 291  Q
                ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10930844 ---tttttttatggatgaagagcaattttcgcaaaattatgtttcatcaagaaatgatatgaggaaactaactcaacattactttgtaagg 10930757  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 12868562 - 12868462
Alignment:
Q  82 gcaacatgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatcca 181  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||  ||||||||| || || |||||||||||  | ||| |||||||||||    
T  12868562 gcaacgtgagttaagtcacgttgtggttacaacctgcgtgagttaactcacgtggaaagtacctagggtgacttaagtcacgcaagggcactttcatcca 12868463  T
Q  182 t 182  Q
    |    
T  12868462 t 12868462  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 13608646 - 13608571
Alignment:
Q  57 ttgttgttctataacaacacgcaacgcaacatgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctga 137  Q
    |||||||||||||||||||||||| |     |||||||||||||  || ||||||||||| ||||||||||||||||||||    
T  13608646 ttgttgttctataacaacacgcaatg-----tgagttaagtcacgatgggtttacaacctgcgtgagttaactcacgctga 13608571  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 24575930 - 24575860
Alignment:
Q  106 gtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttc 176  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||| |||||||| ||| ||  ||||||||    
T  24575930 gtttataacctacgtgagttaactcacgctgaaagtacctagtgtgacttaagttacacagaagtactttc 24575860  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 12345639 - 12345583
Alignment:
Q  82 gcaacatgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaa 138  Q
    ||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||    
T  12345639 gcaacgtgagttaagtcacactgagtttacaacctgcgtgagttaactcaagctgaa 12345583  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 31893840 - 31893785
Alignment:
Q  108 ttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcaca 163  Q
    ||||||||| |||| ||||||||||||||||| ||||||| || ||||||||||||    
T  31893840 ttacaacctgcgtgggttaactcacgctgaaaataccgagcgtgacttaagtcaca 31893785  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 22518370 - 22518447
Alignment:
Q  106 gtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccatt 183  Q
    ||||| |||||| || ||||||||| ||||||||||||| ||||| |||| |||||   ||||||| |||| ||||||    
T  22518370 gtttataacctttgttagttaactcgcgctgaaagtacctagtgtgactttagtcatgcaggggtattttcgtccatt 22518447  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 7254903 - 7255088
Alignment:
Q  1 atgggagaaaattcgcaaaaaatgagtttgaaacacaatggttat----gtttttgtctattgttgttctataacaacacgcaacgcaacatgagttaag 96  Q
    ||||||||||||||||||||||| ||| |||||| || |||||||    |||| ||||| ||| | |||||||||||||| ||  |     ||| | |||    
T  7254903 atgggagaaaattcgcaaaaaattagtatgaaacgcattggttatatatgtttctgtctgttgctattctataacaacacacagtg-----tgaataaag 7254997  T
Q  97 tcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattcaat 187  Q
    |||  ||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||   ||||||||||    
T  7254998 tcatgttgggtttataacctacgtgagttaactcacgctgaaagtaccgagtgtgacttaagtcatgcaggggtacttatgtccattcaat 7255088  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 41071458 - 41071639
Alignment:
Q  1 atgggagaaaattcgcaaaaaatgagtttgaaacacaatggt-tatgtttttgtctattgttgttctataacaacacgcaacgcaacatgagttaagtca 99  Q
    ||||||||||||||||||||| ||||||||||||| |||||  | ||||| ||| | ||| |||||||||||||||| |||||     ||||||||||||    
T  41071458 atgggagaaaattcgcaaaaa-tgagtttgaaacagaatggaatgtgtttctgtttgttgctgttctataacaacacacaacg-----tgagttaagtca 41071551  T
Q  100 cattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattcaatt 188  Q
    | ||   |||| ||| | |||||||||||||| || ||||||||| ||||| ||||||||| | | ||||||||||| ||| |||||||    
T  41071552 cgttagatttataacttacgtgagttaactcaggccgaaagtaccaagtgtgacttaagtctcgt-ggggtactttcgtccgttcaatt 41071639  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 51811236 - 51811114
Alignment:
Q  57 ttgttgttctataacaacacgcaacgcaacatgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaactta 156  Q
    |||||||||||||||| |||||| ||     |||||||||||||  || ||||| ||| |  |||||||||| ||||||||||||||| || || |||||    
T  51811236 ttgttgttctataacagcacgcagcg-----tgagttaagtcacgctgcgtttataacttgtgtgagttaacacacgctgaaagtaccaagcgtgactta 51811142  T
Q  157 agtcacataggggtactttcatccattca 185  Q
    ||||||   ||||||||||| ||||||||    
T  51811141 agtcac-gcggggtactttcgtccattca 51811114  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 7314065 - 7314149
Alignment:
Q  88 tgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtact 173  Q
    |||||||||||||| || ||| ||||||| | |||||||| |||||||||||||| | || || ||||||||||  ||||||||||    
T  7314065 tgagttaagtcacactgggtt-acaacctgcatgagttaagtcacgctgaaagtatcaagggtgacttaagtcaggtaggggtact 7314149  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 37289837 - 37289880
Alignment:
Q  120 tgagttaactcacgctgaaagtaccgagtgtaacttaagtcaca 163  Q
    |||||||||||||| |||||||||||||||| |||||| |||||    
T  37289837 tgagttaactcacgttgaaagtaccgagtgtgacttaactcaca 37289880  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 2568924 - 2568966
Alignment:
Q  120 tgagttaactcacgctgaaagtaccgagtgtaacttaagtcac 162  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  2568924 tgagttaactcacgctgaaagtatcgagtgtgacttaactcac 2568966  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 35414370 - 35414412
Alignment:
Q  108 ttacaaccttcgtgagttaactcacgctgaaagtaccgagtgt 150  Q
    |||||||||  |||||||||||||| |||||||||||||||||    
T  35414370 ttacaacctgagtgagttaactcactctgaaagtaccgagtgt 35414412  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 6298454 - 6298532
Alignment:
Q  2 tgggagaaaattcgcaaaaaatgagtttgaaacacaatggttatgtttttgtctattgttgttctataacaacacgcaa 80  Q
    ||||||||| |||  ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||    
T  6298454 tgggagaaatttcataaaaaatgagtttgaaacacaatggttatatttttgtctgttgtcgttctataataacacgcaa 6298532  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 16496137 - 16496055
Alignment:
Q  106 gtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattcaatt 188  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||| |||||||||||  | | ||| |||| |||||||||||    
T  16496137 gtttacaacctgcgtgagttaactcacgctgaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaatt 16496055  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 1410682 - 1410630
Alignment:
Q  85 acatgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctga 137  Q
    ||||||||||| ||||  |||||||| ||||||| | ||||||||||||||||    
T  1410682 acatgagttaattcacgctgtgtttataaccttcattagttaactcacgctga 1410630  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 24211521 - 24211621
Alignment:
Q  88 tgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattcaat 187  Q
    ||||||||||||  ||| ||||||||||| || ||||||||||||||||||||||||||| || |||||||||||     ||||||||| ||||||||||    
T  24211521 tgagttaagtcatgttgggtttacaacctgcgggagttaactcacgctgaaagtaccgagcgtgacttaagtcacgcgaaggtactttcgtccattcaat 24211620  T
Q  188 t 188  Q
    |    
T  24211621 t 24211621  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 30601408 - 30601443
Alignment:
Q  126 aactcacgctgaaagtaccgagtgtaacttaagtca 161  Q
    ||||||||||||||||||||||||||||||||||||    
T  30601408 aactcacgctgaaagtaccgagtgtaacttaagtca 30601443  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 20928740 - 20928659
Alignment:
Q  118 cgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattcaattaagagtgagtg 199  Q
    |||||||||||||| |||||||||||| | | |||||||||||||| | ||| ||||||  ||||||| || |||| |||||    
T  20928740 cgtgagttaactcatgctgaaagtacctaatataacttaagtcacacatgggaactttcgcccattcagttgagagggagtg 20928659  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 48136306 - 48136400
Alignment:
Q  88 tgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccatt 183  Q
    ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||||| |  || |||||| ||||  | |||||||||||||||||    
T  48136306 tgagttaagtcacgttg-gtttataacattcgtgagttaactcacgttgaaagtacccaacgtgacttaactcacgcaagggtactttcatccatt 48136400  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 34003216 - 34003295
Alignment:
Q  106 gtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattca 185  Q
    |||||||| || |||||||||||||| |||||||||||| ||  | ||||||||||| ||| ||||||||| ||||||||    
T  34003216 gtttacaatctgcgtgagttaactcatgctgaaagtacctagaatgacttaagtcacgtagaggtactttcgtccattca 34003295  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 15424621 - 15424697
Alignment:
Q  86 catgagttaagtcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcac 162  Q
    |||||||||||||||  |  |||||||||||   |||||||||||||| ||||||||||||| || |||||||||||    
T  15424621 catgagttaagtcacgctaggtttacaacctctatgagttaactcacgatgaaagtaccgagcgtgacttaagtcac 15424697  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 26616112 - 26616045
Alignment:
Q  118 cgtgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccattca 185  Q
    |||||||||||||||| |||||||||| || ||||||||||||||  | |||||||||  ||||||||    
T  26616112 cgtgagttaactcacggtgaaagtacctagcgtaacttaagtcacgcaagggtacttttgtccattca 26616045  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 14913450 - 14913513
Alignment:
Q  120 tgagttaactcacgctgaaagtaccgagtgtaacttaagtcacataggggtactttcatccatt 183  Q
    |||||||||||||| |||||||||| || || |||||||||||  | |||||||||| ||||||    
T  14913450 tgagttaactcacgatgaaagtacctagcgtgacttaagtcacgcatgggtactttcgtccatt 14913513  T

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