View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_high_30 (Length: 258)
Name: NF3128_high_30
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4501021 - 4501266
Alignment:
| Q |
1 |
cataagagaaataagtttgagagcttcacagagagaaatattctatatataaagctacaatagaatcaacaaaactaactactacttaaaaattctaact |
100 |
Q |
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| T |
4501021 |
cataagagaaataagtttgagagcttcacagagagaaatattctatatataaagctacaatagaatcaacaaaactaactactacttacaaattctaact |
4501120 |
T |
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| Q |
101 |
aacttttacatgtttattagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcgcggaagagtggggttatggtttgagtattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |
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| T |
4501121 |
aacttttacatgtttattagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcacagaagagtagggttatggtttgagtattgg |
4501220 |
T |
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| Q |
201 |
aataattattgaaactttgagctgcaatttgcatggctgttctctg |
246 |
Q |
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| T |
4501221 |
aataattattgaaactttgagctgcaatttgcatggctgttctctg |
4501266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 4495476 - 4495715
Alignment:
| Q |
17 |
ttgagagcttcacagagagaaatattctatatataaagctacaatagaatcaacaaaactaactactacttaaaaattctaactaactttt--------- |
107 |
Q |
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| T |
4495476 |
ttgagagcttca--gacagaaatattctacttataaagctacaagagaatcaacaaa-ctaactactactaaaaaattctaaccaacttttctaactatc |
4495572 |
T |
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| Q |
108 |
----acatgtttattagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcgcggaagagtggggttatggtttgagtattggaat |
203 |
Q |
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| T |
4495573 |
ttttacatttatattaaaaagtactgaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaat |
4495672 |
T |
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| Q |
204 |
aattattgaaactttgagctgcaatttgcatggctgttctctg |
246 |
Q |
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| T |
4495673 |
aattattgaaactttgagctgcaatttgcattgctgttctctg |
4495715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 4508374 - 4508499
Alignment:
| Q |
121 |
aaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcgcggaagagtggggttatggtttgagtattggaataattattgaaactttga |
220 |
Q |
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| T |
4508374 |
aaagtactcaccagctgaagctgcttgtaaagggtttttaccagagtcacggaagaaaaggattatgttatgattgttggaataattattgaaactttga |
4508473 |
T |
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| Q |
221 |
gctgcaatttgcatggctgttctctg |
246 |
Q |
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| T |
4508474 |
gctgcaatttgcatagctgttttctg |
4508499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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