View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_high_38 (Length: 248)
Name: NF3128_high_38
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39893371 - 39893603
Alignment:
| Q |
1 |
agattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatggatgagaaactgggtgat |
100 |
Q |
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| T |
39893371 |
agattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatggatgagaaactgggtgat |
39893470 |
T |
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| Q |
101 |
gaattggagaaagtggtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgtataaca |
200 |
Q |
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| T |
39893471 |
gaattggagaaagtggtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgtataaca |
39893570 |
T |
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| Q |
201 |
agactttttctgatgaagagaagagacataatt |
233 |
Q |
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| T |
39893571 |
agactttttctgatgaagagaagagacataatt |
39893603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 44642024 - 44642134
Alignment:
| Q |
116 |
gtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgtataacaagactttttctgatg |
215 |
Q |
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| T |
44642024 |
gtttacatgcatggctatgataaagaaggacaccctgtttgttataatatttatggagagtttgataacaaggaggtttataagaaaacattttcagatg |
44642123 |
T |
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| Q |
216 |
aagagaagaga |
226 |
Q |
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| T |
44642124 |
aagagaagaga |
44642134 |
T |
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