View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_high_40 (Length: 242)

Name: NF3128_high_40
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_high_40
NF3128_high_40
[»] chr3 (2 HSPs)
chr3 (6-232)||(20704796-20705021)
chr3 (2-58)||(22318226-22318281)
[»] chr7 (2 HSPs)
chr7 (32-65)||(4451853-4451886)
chr7 (2-54)||(35424898-35424949)
[»] chr2 (2 HSPs)
chr2 (2-87)||(24510906-24510990)
chr2 (35-65)||(23046575-23046605)
[»] chr8 (3 HSPs)
chr8 (2-66)||(40899657-40899721)
chr8 (1-58)||(37325123-37325179)
chr8 (1-65)||(7632687-7632751)
[»] chr4 (3 HSPs)
chr4 (42-85)||(29491946-29491989)
chr4 (3-89)||(12311811-12311897)
chr4 (1-54)||(45195771-45195823)
[»] chr6 (3 HSPs)
chr6 (1-65)||(2513122-2513185)
chr6 (2-66)||(9929327-9929390)
chr6 (2-46)||(30525837-30525881)
[»] chr5 (1 HSPs)
chr5 (2-86)||(18401224-18401308)
[»] chr1 (1 HSPs)
chr1 (11-87)||(32556521-32556596)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 20705021 - 20704796
Alignment:
Q  6 aacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttataggtgnnnnnnngtaacaccc 105  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||    
T  20705021 aacatctcataaaaacctccaaaaatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttatagg-gtgaaaaagtaacaccc 20704923  T
Q  106 ttggtgttaatgcatggcaaccaacataggcaactgagggcccaaaattttgcttgcagttcctgaaaaccagggccggttcaaccgcaaggttagacaa 205  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  20704922 ttggtgttaatgcatggcaaccaacataggcaaatgagggcccaaaattttgcttgcagttcctggaaaccagggccggttgaaccgcaaggttagacaa 20704823  T
Q  206 gccatatttactcctatatgtcctatg 232  Q
    |||||||||||||||||||||| ||||    
T  20704822 gccatatttactcctatatgtcgtatg 20704796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 22318281 - 22318226
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaat 58  Q
    |||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||    
T  22318281 cataaacatctcataaaaaccttcaaa-acatgttaaaacatttcatattttaaaat 22318226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 4451886 - 4451853
Alignment:
Q  32 atgttaaaacatttcaaattttaaaatctgaata 65  Q
    ||||||||||||||||||||||||||||||||||    
T  4451886 atgttaaaacatttcaaattttaaaatctgaata 4451853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 35424898 - 35424949
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaatttta 54  Q
    |||||||||| |||||||||||||||| ||||||||||| |||||| ||||||    
T  35424898 cataaacatcgcataaaaacctccaaa-atatgttaaaatatttcagatttta 35424949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 24510990 - 24510906
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttatagg 87  Q
    |||||||||| |||||||||||||||| ||| ||| ||| |||||| ||||||||||| ||||||  || | |||||||| |||||    
T  24510990 cataaacatcccataaaaacctccaaa-atacgtttaaatatttcagattttaaaatccgaatagggtgtgtgaaaaactcatagg 24510906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 23046605 - 23046575
Alignment:
Q  35 ttaaaacatttcaaattttaaaatctgaata 65  Q
    |||||||||||||||||||||||||||||||    
T  23046605 ttaaaacatttcaaattttaaaatctgaata 23046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 40899721 - 40899657
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatag 66  Q
    |||||||| | ||||||||||| |||| | | ||||||| |||||| ||||||||||||||||||    
T  40899721 cataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatag 40899657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37325179 - 37325123
Alignment:
Q  1 acataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaat 58  Q
    ||||||||||| ||| |||||||||||| | | ||||||||||||| |||||||||||    
T  37325179 acataaacatcccattaaaacctccaaa-acacgttaaaacatttcgaattttaaaat 37325123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7632751 - 7632687
Alignment:
Q  1 acataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 65  Q
    ||||||||| |  |||||||||| |||| ||| ||| ||| ||||||||||||||||| ||||||    
T  7632751 acataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaata 7632687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 29491946 - 29491989
Alignment:
Q  42 atttcaaattttaaaatctgaatagaatgcgcgaaaaacttata 85  Q
    |||| |||||||||||||||||||||| |||||| |||||||||    
T  29491946 attttaaattttaaaatctgaatagaacgcgcgagaaacttata 29491989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 12311897 - 12311811
Alignment:
Q  3 ataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttataggtg 89  Q
    ||||||| |||||||||| ||| ||| ||||||||||| | |||| || ||||||||| ||||  | |||||| ||||| |||||||    
T  12311897 ataaacacctcataaaaatctctaaaaatatgttaaaataattcagatgttaaaatctaaataagacgcgcgagaaactcataggtg 12311811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45195771 - 45195823
Alignment:
Q  1 acataaacatctcataaaaacctccaaatatatgttaaaacatttcaaatttta 54  Q
    |||||||||||| ||||||| ||||||| ||| ||||||||||||| |||||||    
T  45195771 acataaacatcttataaaaatctccaaa-atacgttaaaacatttcgaatttta 45195823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2513185 - 2513122
Alignment:
Q  1 acataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaata 65  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||||   |||||| ||||||||||    
T  2513185 acataaacacctcataaaaatctccaaatc-atgttaaaacattttggattttagaatctgaata 2513122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 9929390 - 9929327
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatag 66  Q
    |||||||| |||||||||||||||||| | | ||| ||| |||||| |||||||||||| |||||    
T  9929390 cataaacacctcataaaaacctccaaa-acacgttgaaagatttcagattttaaaatctaaatag 9929327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 30525837 - 30525881
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttc 46  Q
    ||||||||||||||||||||||||||| | | ||| |||||||||    
T  30525837 cataaacatctcataaaaacctccaaaaacacgttgaaacatttc 30525881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 18401308 - 18401224
Alignment:
Q  2 cataaacatctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttatag 86  Q
    |||||||| |||||| | ||||||||| | | ||| |||||||||| ||| || |||||||||||||  ||||| ||||| ||||    
T  18401308 cataaacacctcatacagacctccaaaaacacgttgaaacatttcagattctataatctgaatagaacacgcgataaactcatag 18401224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 32556521 - 32556596
Alignment:
Q  11 ctcataaaaacctccaaatatatgttaaaacatttcaaattttaaaatctgaatagaatgcgcgaaaaacttatagg 87  Q
    |||||||||||||||||| ||| |||| || |||||| ||||||||||| |||||| | | |||| ||||| |||||    
T  32556521 ctcataaaaacctccaaa-atacgttacaatatttcagattttaaaatccgaataggacgtgcgagaaactcatagg 32556596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University