View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_high_41 (Length: 240)

Name: NF3128_high_41
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_high_41
NF3128_high_41
[»] chr5 (2 HSPs)
chr5 (19-240)||(25103893-25104113)
chr5 (19-240)||(25162986-25163206)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 25104113 - 25103893
Alignment:
Q  19 atttcaaatatgctatctagctagcttggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaact 118  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25104113 attttaaatatgctatctagctagctaggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaact 25104014  T
Q  119 accgcaagtcataacttttctgcaaaacacatttccataaattttcttctcatcggaacttggttctggtttactctgataaattaacaatagcaataag 218  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  25104013 atcgcaagtcataacttttctgcaaaacacatttccataacttttcttctcatcggaactt-gttctggtttactctgataaaataacaatagcaataag 25103915  T
Q  219 agtatgaacttatattcacttc 240  Q
    |||||||| |||||||||||||    
T  25103914 agtatgaatttatattcacttc 25103893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 25163206 - 25162986
Alignment:
Q  19 atttcaaatatgctatctagctagcttggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaact 118  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25163206 attttaaatatgctatctagctagctaggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaact 25163107  T
Q  119 accgcaagtcataacttttctgcaaaacacatttccataaattttcttctcatcggaacttggttctggtttactctgataaattaacaatagcaataag 218  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  25163106 atcgcaagtcataacttttctgcaaaacacatttccataacttttcttctcatcggaactt-gttctggtttactctgataaaataacaatagcaataag 25163008  T
Q  219 agtatgaacttatattcacttc 240  Q
    |||||||| |||||||||||||    
T  25163007 agtatgaatttatattcacttc 25162986  T

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