View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_high_5 (Length: 507)
Name: NF3128_high_5
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 20705533 - 20705027
Alignment:
| Q |
1 |
ctgatattgtggtccaccaacttgaatttcatggtaaagggagtaatttcttttttaagcccttctgctacaagtacttccaccatgcacacgtgacctt |
100 |
Q |
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| T |
20705533 |
ctgatagtgtggtccaccaacttcaatttcatggtaaagggagtaatttcttttttaagcccttctgctacaagtacttccaccatgcacacgtgacctt |
20705434 |
T |
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| Q |
101 |
taacctatctctaaatctaaaaaatgtacctccaataatattaaagtatagagtactagaagagttacctctaaaatcataatgtgtggaccaagtatcg |
200 |
Q |
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| T |
20705433 |
taacctatctctaaatctaaaaaatgtacctccaataatattaaagtatagagtactagaagagttacctctaaaatcataatgtgtggaccaagtatcg |
20705334 |
T |
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| Q |
201 |
tttgatatcacatcacgcgtgaggatcctgtcatctcaaggggaactatgttttgattcatcaattataggtcctttgcttcattgaaagttttagcttt |
300 |
Q |
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| T |
20705333 |
tttgatatcacatcacgcgtgaggatcctgtcatctcaaggggaactatgttttgattcatcaattataggtcctttgcttcattgaaagttttagcttt |
20705234 |
T |
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| Q |
301 |
ttccaatcaatggtgtacttatatcatgcgtagactaatttcattgatatgttttatcaatgaaccaataattcaaacagaaaagcaacgttatcttann |
400 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20705233 |
ttccaatcaatggtgtacttatatcatgcgaagactaatttcattgatatgttttatcaatgaaccaataattcaaacagaaaagcaacgttatctta-t |
20705135 |
T |
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| Q |
401 |
nnnnnnctgaattattttgtcatttcatattggatttagaccgtttctttt-cctatcttatgaacttctcgcatgtcctatgcaatttagattataaaa |
499 |
Q |
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| T |
20705134 |
ttatttctgaattattttgtcatttcaaattggagttagaccgttttttttccctatcttatgaacttctcgcatgtcctatgcagtttagattatagaa |
20705035 |
T |
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| Q |
500 |
tccaaacg |
507 |
Q |
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| T |
20705034 |
tccaaacg |
20705027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 507
Target Start/End: Original strand, 33013186 - 33013234
Alignment:
| Q |
459 |
tatgaacttctcgcatgtcctatgcaatttagattataaaatccaaacg |
507 |
Q |
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| T |
33013186 |
tatgagcttctcgcgtgttctatgcaatttagattataaaatctaaacg |
33013234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 6362858 - 6362791
Alignment:
| Q |
436 |
ttagaccgtttcttttcctatcttatgaacttctcgcatgtcctatgcaatttagattataaaatcca |
503 |
Q |
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| T |
6362858 |
ttagactgtttctttttctatcttatgagtttctcgcgcgtcttatgcaatttgaattataaaatcca |
6362791 |
T |
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