View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3128_high_6 (Length: 468)
Name: NF3128_high_6
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 136 - 460
Target Start/End: Original strand, 22596819 - 22597143
Alignment:
| Q |
136 |
ccgatagaaaacgagatggggatgaagaggcaaaattttccctgccttattgcatcaattatgtccaaaggaaaataaatgaataaggtcaaatacaaaa |
235 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22596819 |
ccgataggaaacgagttggggataaagaggcaaaatttgccctgcctcattgtatcaattatgtccaaaggaaaataaatgaataaggtcaaatacaaaa |
22596918 |
T |
|
| Q |
236 |
gaaaacaattgatggttgaacacaaactttgtgtgtccctttcaaatcttatccaatcattatatctnnnnnnnnnnnnnnncttgtgctatctccagat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22596919 |
gaaaacaattgatggttgaacacaaactttgtgtgtccctctcaaatcttatccaatcattatatctaaaaaatacaaaaaacttgtgctatctccagat |
22597018 |
T |
|
| Q |
336 |
acaactacagcaatatttgctactatttattttatgttagtattatccaataataactcttcatgaaacttattgggaatcatttgaacctcttcttctt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22597019 |
acaactacagcaatatttgctactatttattttatgttagtattatccaataataactcttcatgaaacttattgggaatcatttgaacctcttcctctt |
22597118 |
T |
|
| Q |
436 |
ctaacaagcatccttcattcatctc |
460 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22597119 |
ctaacaagcatccttcattcatctc |
22597143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 344 - 460
Target Start/End: Original strand, 17056434 - 17056550
Alignment:
| Q |
344 |
agcaatatttgctactatttattttatgttagtattatccaataataactcttcatgaaacttattgggaatcatttgaacctcttcttcttctaacaag |
443 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| |||| ||| | ||||| || | || ||||| ||||| ||||||| |||| ||||| ||||| | |||| |
|
|
| T |
17056434 |
agcaatatttgctactatttaatttatattaatattttccgacaataagtccttataaaactgattggaaatcattggaacatcttcctcttcgatcaag |
17056533 |
T |
|
| Q |
444 |
catccttcattcatctc |
460 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17056534 |
catccttcattcatctc |
17056550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 17056302 - 17056343
Alignment:
| Q |
39 |
aatttttcacagaaggaatagttgccatttttagcattttag |
80 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
17056302 |
aatttttcacagaaagaatagttgccttttttagcaatttag |
17056343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 47335479 - 47335513
Alignment:
| Q |
175 |
ccctgccttattgcatcaattatgtccaaaggaaa |
209 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
47335479 |
ccctgcctcattgcatcaattatgtccaaaggaaa |
47335513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University