View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3128_high_7 (Length: 442)
Name: NF3128_high_7
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 14220217 - 14219779
Alignment:
| Q |
1 |
tgatgttgttcatagataatcaaagtatgataaatttcacctaatagctgattattcataaaagaatcgttgattatctagagcattcgtagaagaatcg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14220217 |
tgatgttgttcatagataatcaaggtatgacaaatttcacctaataattgattatccataaaagaatcgttgattatctagagcattcgtagaagaatcg |
14220118 |
T |
|
| Q |
101 |
tttctttaaaggtatgacaaattcgaacatttcaattacctttatcaaacttaagattagacaccactacttttaaatctaaattaagctccattttcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14220117 |
tttctttaaaggtatgacaaattcgaacatttcaattatctttatcaaacttaaaattagacaccactacttttaaatctaaattaagctccattttata |
14220018 |
T |
|
| Q |
201 |
aaatccacgctctatagctatctttaaacctttnnnnnnnnnctccacataactctactacaaacacactacacactccctgacactttgaaaatccaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
14220017 |
aaatccacgctctatagctatctttaaacctttaaaaaaaat-tccacataactctgctacaaacacactacacactccctaaagctttgaaaatccaca |
14219919 |
T |
|
| Q |
301 |
aattcactcacctctatcattacaaaaaattcttacacaatcggacacactattacctctagtagctccattcatatttaggcgaacccatcccattgct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14219918 |
aattcactcacctctatcattacaaaaaattcttacacaatcggacacactattacctctagtagctccattcatatttaggcgaacccatcctattgct |
14219819 |
T |
|
| Q |
401 |
ggcagtttccacctaatattctcttttatgaaagtattat |
440 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
14219818 |
ggcagttttcacctaatgttctcttttatgaaagtattat |
14219779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 153 - 396
Target Start/End: Original strand, 32713278 - 32713517
Alignment:
| Q |
153 |
aagattagacaccactacttttaaatctaaattaagctccattttctaaaatccacgctctatagctatctttaaacctttnnnnnnnnnctccacataa |
252 |
Q |
| |
|
||||||||||||||||| | || |||||| || |||||||| ||| | ||| |||| |||| ||||||||||||||||||| ||| || || |
|
|
| T |
32713278 |
aagattagacaccactagtcttgaatctacatgaagctccaatttatgaaagccactctctctagctatctttaaacctttgaaaa----ctctccagaa |
32713373 |
T |
|
| Q |
253 |
ctctactacaaacacactacacactccctgacactttgaaaatccacaaattcactcacctctatcattacaaaaaattcttacacaatcggacacacta |
352 |
Q |
| |
|
|||| ||||||| | ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||||| | | ||| | |||| |||| |
|
|
| T |
32713374 |
ctctgctacaaatatactacacactcccatacactttgaaaatccacaagtccactcacctctatcattacgcaaaattcctccgcaaccagacatacta |
32713473 |
T |
|
| Q |
353 |
ttacctctagtagctccattcatatttaggcgaacccatcccat |
396 |
Q |
| |
|
||||||||||| |||||| |||||||| |||| ||||||||| |
|
|
| T |
32713474 |
ttacctctagtggctccaccaatatttagccgaatccatcccat |
32713517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University