View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_high_9 (Length: 425)
Name: NF3128_high_9
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 6745721 - 6745332
Alignment:
| Q |
20 |
atatatatttttattgatgttaaataagtcatggtaaacaattgtattaccannnnnnnnaatattcgaacctaaccaaccgaaattaacaaaaatgaga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| | || | ||||||||||||||||||| |||||||||||| |
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| T |
6745721 |
atatatatttttattgatgttaaataagtcatggtaaaaaattgtattaccattttttttattaagcaaacctaaccaaccgaaattgacaaaaatgaga |
6745622 |
T |
|
| Q |
120 |
atagaccttgtattaccattaaacattaattaatataagttacgaaatacttccctatacattgaaaattacaattgcatcttcaccggttatcaataat |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6745621 |
atagaccttgtattaccattaaacattaattattataagttacgaaatacttccctatactttgaaaattacaattgcatcttcaccggttatcaataat |
6745522 |
T |
|
| Q |
220 |
gaattggtgattgaacttagatgtcgaaaacaaaaacacacgtgaatttggtaatagaggaattttatactattatgaaagataagtaactacaaaataa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6745521 |
gaattggtgattgaacttagatgtcgaaaacaaaaacacacgtgaatttggtaataaaggaattttatactattatgaaagataagtaactacaaaataa |
6745422 |
T |
|
| Q |
320 |
-ggagtactactatcctttctattgtgcttgtcatttgatttttctccattttcaatcctcgccatcaaacacatcatccacatgaaaaa |
408 |
Q |
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| T |
6745421 |
gggagtactactatcctttctattgtgcttgtcatttgatttttctccattttcaatcctcgccatcaaacacatcatccacatgaaaaa |
6745332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 27070785 - 27070735
Alignment:
| Q |
21 |
tatatatttttattgatgttaaataagtcatggtaaacaattgtattacca |
71 |
Q |
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|||||||||| |||||||||||||||||||| | | | ||||||||||||| |
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| T |
27070785 |
tatatattttcattgatgttaaataagtcataggacaaaattgtattacca |
27070735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 27150871 - 27150821
Alignment:
| Q |
21 |
tatatatttttattgatgttaaataagtcatggtaaacaattgtattacca |
71 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | | | ||||||||||||| |
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|
| T |
27150871 |
tatatattttcattgatgttaaataagtcataggacaaaattgtattacca |
27150821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 9490376 - 9489985
Alignment:
| Q |
16 |
agacatatatatttttattgatgttaaataagtcatggtaaacaattgtattaccannnnnnnnaatattcgaacctaaccaaccgaaattaacaaaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||| |||||||| |
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| T |
9490376 |
agacatatatatttttattgatgttaaataagtcatggtaaaaaattgtattaccattttttt-aagaagcgaacctaaccaaccgaaattgacaaaaat |
9490278 |
T |
|
| Q |
116 |
gagaatagaccttgtattaccattaaacattaattaatataagttacgaaatacttccctata-----cattgaaaattacaattgcatcttcaccggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
9490277 |
gagaatagaccttgtattaccattaaacattaattattataagttacgaaatacttccctatagaccacattgaaaattacaattgcatcttcaccgatt |
9490178 |
T |
|
| Q |
211 |
atcaataatgaattggtgattgaacttagatgtcgaaaacaaaaacacacgtgaatttggtaatagaggaattttatactattatgaaagataagtaact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9490177 |
atcaataatgaattggtgattgaacttagatgtcgaaaacaaaaagacacgtgaatttggtaataaaggaattttatactattatgaaagataagtaact |
9490078 |
T |
|
| Q |
311 |
acaaaataaggagtactactatcctttctattgtgcttgtcatttgatttttctccattttcaatcctcgccatcaaacacatcatccacatgaaaaa |
408 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9490077 |
acaaaataaggagtactactatcct-----ttgtgcttgtcatttgatttttctccattttcaatcctcgccatcaaacacatcatccacatgaaaaa |
9489985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 4435133 - 4434735
Alignment:
| Q |
16 |
agacatatatatttttattgatgttaaataagtcatggtaaacaattgtattaccannnnnnnnaatattcgaacctaaccaaccgaaattaacaaaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||| |||||||| |
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| T |
4435133 |
agacatatatatttttattgatgttaaataagtcatggtaaaaaattgtattaccattttttt-aagaagcgaacctaaccaaccgaaattgacaaaaat |
4435035 |
T |
|
| Q |
116 |
gagaatagaccttgtattaccattaaacattaattaatataagttacgaaatacttccctata-----cattgaaaattacaattgcatcttcaccggtt |
210 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
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| T |
4435034 |
gaaaatagaccttgtattaccattaaacattaattattataagttacgaaatactttcctatagacgacattgaaaattacaattgcatcttcaccaatt |
4434935 |
T |
|
| Q |
211 |
atcaataatgaattggtgattgaacttagatgtcgaaaacaaaaacacacgtgaatttggtaatagaggaattttatactattat----gaaagataagt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
4434934 |
atcaataatgaattggtgattgaacttagatgtcgaaaacaaaaacac--gtgaatttggtaataaaggaattttatactactatatatgaaagataagt |
4434837 |
T |
|
| Q |
307 |
aactacaaaataaggagtactactatcctttctattgtgcttgtcatttgatttttctccattttcaatcctcgccatcaaacacatcatccacatgaaa |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4434836 |
aactacaaaataaggagtactactatcctttctattgtacttgtcatttgatttttctccattttcaatccttgccatcaaacacatcatccacatgaaa |
4434737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15515344 - 15515394
Alignment:
| Q |
21 |
tatatatttttattgatgttaaataagtcatggtaaacaattgtattacca |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
15515344 |
tatatatttttattgatgttaaataagtcatagcaaaaaattgtattacca |
15515394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 15840410 - 15840360
Alignment:
| Q |
21 |
tatatatttttattgatgttaaataagtcatggtaaacaattgtattacca |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
15840410 |
tatatatttttattgatgttaaataagtcatagcaaaaaattgtattacca |
15840360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 15846466 - 15846417
Alignment:
| Q |
21 |
tatatatttttattgatgttaaataagtcatggtaaacaattgtattacc |
70 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| | ||| |||||||||||| |
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|
| T |
15846466 |
tatatattttgattgatgttaaataaatcatagcaaaaaattgtattacc |
15846417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 15855676 - 15855627
Alignment:
| Q |
21 |
tatatatttttattgatgttaaataagtcatggtaaacaattgtattacc |
70 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| | ||| |||||||||||| |
|
|
| T |
15855676 |
tatatattttgattgatgttaaataaatcatagcaaaaaattgtattacc |
15855627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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