View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_11 (Length: 423)
Name: NF3128_low_11
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 11881025 - 11881271
Alignment:
| Q |
20 |
aacaagaatgtatatacacgtattttaagcatcctcacggtctaagcatgtgtttggatgcacatttgatcactatttcttgcgtcctaatgttgtttca |
119 |
Q |
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| T |
11881025 |
aacaagaatgtatatacacggattttaagcatcctcacggtctaagcatgtgtttggatgcacatttgatcactatttcttgcgtcctaatgttgtttca |
11881124 |
T |
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| Q |
120 |
ccgtgaatttttaaaaataacaaaacgaagcttctgcattgaagtggtttttcacagtgatttttgttgccgctgccaaaagactaaacatcctataagt |
219 |
Q |
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| T |
11881125 |
ccgtgaatttttaaaaacaacaaaacgaagcttctgcattgaagtggtttttcaccgtgatttttgttgccgctgccaaaagactaaacatcctataatt |
11881224 |
T |
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| Q |
220 |
tacataaattttcatttccatttggtgaaaaaatgatattactttgat |
267 |
Q |
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| T |
11881225 |
tacataaattttcattt-catttggtgaaaaaatgatattactttgat |
11881271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 268 - 413
Target Start/End: Original strand, 38701063 - 38701207
Alignment:
| Q |
268 |
ggtaaagtttaatttggacccattgaaaaattggtctaacttggaccaattaatttaaaccattgatcaaataggatgtacagattttatggtcgtccat |
367 |
Q |
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| T |
38701063 |
ggtaaagtttaatttggacc-attgaaaaattggtctaacttgaaccaattaacttaaaccattgatcaaataggatgtatagattttatggtagtccat |
38701161 |
T |
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| Q |
368 |
ctgcacatgagttgctctcacactcttcctgtatctctctcctttg |
413 |
Q |
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| T |
38701162 |
ttgcacatgagttgctctcacactcttcctgtatctctctcctttg |
38701207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 268 - 408
Target Start/End: Original strand, 54385230 - 54385370
Alignment:
| Q |
268 |
ggtaaagtttaatttggacccattgaaaaattggtctaacttggaccaattaatttaaaccattgatcaaataggatgtacagattttatggtcgtccat |
367 |
Q |
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| T |
54385230 |
ggtaaagtttaatttggacccattgaaaaattgatccaacttggaccaattaacttagaccattgatcaaataagatgtatagattttatagtagtccat |
54385329 |
T |
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| Q |
368 |
ctgcacatgagttgctctcacactcttcctgtatctctctc |
408 |
Q |
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| T |
54385330 |
ctgcacatgagttgctctctcactcttccagtatctctctc |
54385370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 17083894 - 17084000
Alignment:
| Q |
274 |
gtttaatttggacccattgaaaaattggtctaacttggaccaattaa-tttaaaccattgatcaaataggatgtacagattttatggtcgtccatctgca |
372 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||||||| |||||||| |||||| ||| ||||||| || |
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| T |
17083894 |
gtttaatttggacccattgaaaaattggtccaacttggacccattaacttaaaaccattgatcaaataagatgtacatattttacggtagtccatccaca |
17083993 |
T |
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| Q |
373 |
catgagt |
379 |
Q |
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| T |
17083994 |
catgagt |
17084000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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