View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_16 (Length: 357)
Name: NF3128_low_16
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_16 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 67 - 329
Target Start/End: Original strand, 31613 - 31875
Alignment:
| Q |
67 |
gatgaattttaatttcttacaacacaatggctttacgtcgtttcaactgactttccatgggatcaagcatggttgaagagccatgaacagtgaggaaaat |
166 |
Q |
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| T |
31613 |
gatgaattttaatttcttacaacacaatggccttacgtcgtttcaactgactttccatgggatcaagcatggttgaagagccatgaacagtgaggaaaat |
31712 |
T |
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| Q |
167 |
gggtgaaacaaaaatgccaagtttttgccagtcaatggaagtgttgggtgggtgagcataatgcttgaggagagatgacacaaactgagaaggagtaacc |
266 |
Q |
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| T |
31713 |
gggtgaaacgaaaatgccaagcttttgccagtcaatggaagtgttgggtgggtgagcataatgtttgaggagagatgacacaaactgagaaggagtaacc |
31812 |
T |
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| Q |
267 |
ccttcgttcaccattgacttaactgatccaatcagagtgcgtgtcagatctagaagtgcttca |
329 |
Q |
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| T |
31813 |
ccttcgttcaccatagagttaaccgatccaaccagagtgcgtgtcagatctagaagtgcttca |
31875 |
T |
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Back To:
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Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 90 - 329
Target Start/End: Original strand, 52800126 - 52800371
Alignment:
| Q |
90 |
acaatggctttacgtcgtttcaactgactttccatgggatcaagcatggttgaagagccatgaacagtgaggaaaatgggtgaaacaaaaatgccaagtt |
189 |
Q |
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| T |
52800126 |
acaatggttttgcgttgtttcaactgattttccatgggaccaagcatggtagaggaaccatgaacagtgaggaaaatgggggaaacagaaatgccgagtt |
52800225 |
T |
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| Q |
190 |
tttgccagtcaatggaag------tgttgggtgggtgagcataatgcttgaggagagatgacacaaactgagaaggagtaaccccttcgttcaccattga |
283 |
Q |
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| T |
52800226 |
tatgccagtcaatggaagcggcgttgttgggtgggtgagcatagtgtttgagaagagatgaaacaaactgagaaggagtaacaccttcgttgacaagaga |
52800325 |
T |
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| Q |
284 |
cttaactgatccaatcagagtgcgtgtcagatctagaagtgcttca |
329 |
Q |
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| T |
52800326 |
tttaacggatccaacaagagtgcgtgtcagatctagaagtgcttca |
52800371 |
T |
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