View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_18 (Length: 350)
Name: NF3128_low_18
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 4501021 - 4500695
Alignment:
| Q |
9 |
gagatgaatccttatctctttgatcatgtgatttttaacactttctgatcaaaaatcatctttattttgttttcatttaagcacttacactgaataatat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4501021 |
gagatgaatccttatctctttgatcatgtgatttttaacactttctgatcaaaaaacatctttattttgttttcatttaagcacttacactgaataatat |
4500922 |
T |
|
| Q |
109 |
cttgcttctttttggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4500921 |
cttgcttctttttggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgct |
4500822 |
T |
|
| Q |
209 |
gatgttggagccatgtttcaagtaccaacaatttcattttcttctccattagtcccttcatcattaacgcaaactcgttggccattcttgattcagatgg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4500821 |
gatgttggagccatgtttcaagtaccaacaatttcattttcttctccattagtcccttcatcattaacgcaaactcgttggccattcttgattcagatgg |
4500722 |
T |
|
| Q |
309 |
ctcaaaaccaaactgcacaaataaact |
335 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
4500721 |
ctcaaaatcaaactgcacaaataaact |
4500695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 330
Target Start/End: Complemental strand, 4495453 - 4495132
Alignment:
| Q |
9 |
gagatgaatccttatctctttgatcatgtgatttttaacactttctgatcaaaaatcatctttattttgttttcatttaagcacttacactgaataatat |
108 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||| |
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| T |
4495453 |
gagatgaatccttctctctttgatcatgtgatttccaacactttctgatcaaaaaacatatttattttgttttcatttaagcacttacactgaacagtat |
4495354 |
T |
|
| Q |
109 |
cttgcttctttttggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgct |
208 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| | ||| |
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| T |
4495353 |
cttgcttcttattggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcacggaaacatggcaggaagcgtctattatggct |
4495254 |
T |
|
| Q |
209 |
gatgttggagccatgtttcaagtaccaacaatttcattttcttctccattagtcccttcatcattaacgcaaactcgttggccattcttgattcagatgg |
308 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
4495253 |
gatgtcggagccatgtttcaagtaccaacaatttcattttcctcttcattagtcccttcatcattaatgcaacttcgttggccattcttgattcaaatgg |
4495154 |
T |
|
| Q |
309 |
ctcaaaaccaaactgcacaaat |
330 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
4495153 |
ctcaaaatcaaactgcacaaat |
4495132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 108 - 335
Target Start/End: Complemental strand, 4508165 - 4507936
Alignment:
| Q |
108 |
tcttgcttctttttggtttttcagctgaagaattaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgc |
207 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4508165 |
tcttgcttcttgttggtttt-cagctgaagatttaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgc |
4508067 |
T |
|
| Q |
208 |
tgatgttggagccatgtttcaagtaccaacaatttcattttctt---ctccattagtcccttcatcattaacgcaaactcgttggccattcttgattcag |
304 |
Q |
| |
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||| ||||||||| ||||||| ||||||||||||||||||||| |||| |||||| ||||||||| || |||| ||||||||| ||||||||||| |
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| T |
4508066 |
tgactttggagccaagtttcaaataccaacaatttcattttcttctcctccgttagtctcttcatcatcaatgcaatttcgttggcctttcttgattcaa |
4507967 |
T |
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| Q |
305 |
atggctcaaaaccaaactgcacaaataaact |
335 |
Q |
| |
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||||||||||| || |||||||||| |||| |
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|
| T |
4507966 |
atggctcaaaatcattctgcacaaatgaact |
4507936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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