View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_19 (Length: 350)
Name: NF3128_low_19
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 46964230 - 46963906
Alignment:
| Q |
19 |
gtgtttacttcaatttttgtgggagagtctgttttgggttgggggatgtttgtgcttgtcagctaaatagattgtgattaattatgctgattttgttgag |
118 |
Q |
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| T |
46964230 |
gtgtttacttcaatttttgtgggagagtctgttttggattgggggatgtttgtgcttgtcagctaaatagattgtgattaattatgctgattttgttgag |
46964131 |
T |
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| Q |
119 |
ttccattttggggggaaattcgctatgttgtcagttcaggatagcacaacggagcagtcaaccccaaaactgagatgactgcaggaattattattaaacg |
218 |
Q |
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| T |
46964130 |
ttccattttggggggaaattcgctatgttgtcagttcaggatagcacaacggagcagtcaaccccaaaactgagatgactgcaggaattattattaaacg |
46964031 |
T |
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| Q |
219 |
ttacttgatatatttaggaatcattatacatttaatactaataaactataattactggaaaatgaaacaaattactcaaactctttgtgctgcaatagcg |
318 |
Q |
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| T |
46964030 |
ttacttgatatatttaggaatcattatacatttaatactaataaactataattactggaaaatgaaacaaattactcaaactctttgtgctgcaatagcg |
46963931 |
T |
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| Q |
319 |
aaaaatcgcaaaaagctcaactctg |
343 |
Q |
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| T |
46963930 |
aaaaattgcaaaaagctcaactctg |
46963906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 7532344 - 7532179
Alignment:
| Q |
22 |
tttacttcaatttttgtgggagagtctgttttgggttgggggatgtttg----tgcttgtcagctaaatagattgtgattaattatgctgattttgttga |
117 |
Q |
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| T |
7532344 |
tttaattcaatttttgtgggcaagtctattttgggttggaggatgtttgtgcctgcttatctgccaaataga--ctgattaattatgctgattctgttgg |
7532247 |
T |
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| Q |
118 |
gttccattttggggggaaattcgctatgttgtcagttcaggatagcacaacggagcagtcaaccccaaaactg |
190 |
Q |
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| T |
7532246 |
attccttttttgcgggatttttgctgtgttgtccgtcctggatagca-----gagcggtcaaccccaaaactg |
7532179 |
T |
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