View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_20 (Length: 342)
Name: NF3128_low_20
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_20 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 8316616 - 8316932
Alignment:
| Q |
19 |
atgtccaaggtgtcatgtttgcggcaatcataaagccaatttgcgcgatgcagaagtatatgaaaggcgtgtggagatagattttgagagcgggatgaaa |
118 |
Q |
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| T |
8316616 |
atgtccaaggtgtcatgtttgcggaaatcataaagccaatttgcgcgatgcagaagtatatgaaaggcgtgtggagatagattttgagagcgggatgaaa |
8316715 |
T |
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| Q |
119 |
atagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagagcacttctccttacttcaatctcaagcatggagttggaaagattttctttac |
218 |
Q |
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| T |
8316716 |
atagaatcaggtaaaaaggagcagcagtttgtaaattttgttggcagagcacttctccttacttcaatctcaagcatggagttggaaagattttctttac |
8316815 |
T |
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| Q |
219 |
tgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatcttgaatcggagagtaaaaattcttcggatccattcatctttttatca |
318 |
Q |
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| T |
8316816 |
tgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatcttgaatcggagagtaaaaattcttcggatccattcatctttttatca |
8316915 |
T |
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| Q |
319 |
gctcctcttctctgctc |
335 |
Q |
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| T |
8316916 |
gctccccttttctgctc |
8316932 |
T |
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Target: scaffold1297 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 2125 - 2046
Alignment:
| Q |
240 |
tatcccttcaaaatacttggatctctagcatcttg---aatcggagagtaaaaattcttcggatccattcatctttttat |
316 |
Q |
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| T |
2125 |
tatcacttcaaaatacatggatctctaccatcttgaataataggagagtcaagaatcttaggatccattcatatttttat |
2046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 28111777 - 28111704
Alignment:
| Q |
200 |
ttggaaagattttctttactgatcaataacaagcgtgatatatcccttcaaaatacttggatctctagcatctt |
273 |
Q |
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| T |
28111777 |
ttggaaaacttttcttttgtgatctataacaaacgttgtgtatcacttcaaaatacatggatctctagcatctt |
28111704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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