View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_23 (Length: 324)
Name: NF3128_low_23
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 12634259 - 12634533
Alignment:
| Q |
19 |
acggtgtaccaatagctgtcaactcgtacaccaagccgatatgcttcgaaaattctgcataatgcagaataaatctgcaatcaaaaacactctccaatgc |
118 |
Q |
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| T |
12634259 |
acggtgtaccaatagctgtcaactcatacaccaagctgatatgcttcgaaaattctgcataatgcagaataaatctgcaatcaaaaacactctccaatgc |
12634358 |
T |
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| Q |
119 |
cacaaatgcactcctcaaacatttcacatacacaactcagcnnnnnnntacacataccaaaagccttattaacaaaacaactctcgctacatcagaccaa |
218 |
Q |
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| T |
12634359 |
cacaaatgcactcctcaaacatttcacatacacaactcagcaaaaaaatacacataccaaaagccttattaacaaaacaactctcgctacattagaccaa |
12634458 |
T |
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| Q |
219 |
aataggcgcggaaattctattctgttacaccagaaaagtgacagttgaatcggcaacaaaaccataccgaaaacg |
293 |
Q |
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| T |
12634459 |
aataggcgcggaaattctattctgttacaccagaaaaatgacagttgaatcggcaacaaaaccataccgaaaacg |
12634533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 290
Target Start/End: Complemental strand, 18918619 - 18918496
Alignment:
| Q |
167 |
tacacataccaaaagccttattaacaaaacaactctcgctacatcagaccaaaataggcgcggaaattctattctgttacaccagaaaagtgacagttga |
266 |
Q |
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| T |
18918619 |
tacacacaccaaaatttttactaacaaaaaaactctagctacatcagaccaaaacaggcgcggaaattttattttgttacaccagaaaaatgaaagttga |
18918520 |
T |
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| Q |
267 |
atcggcaacaaaaccataccgaaa |
290 |
Q |
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| T |
18918519 |
aatggcaacaaaaccataccgaaa |
18918496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 21124485 - 21124435
Alignment:
| Q |
68 |
aaattctgcataatgcagaataaatctgcaatcaaaaacactctccaatgc |
118 |
Q |
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||||||||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
21124485 |
aaattctgcattatgcaggaaaaatctgcaatcaaaaacactctccaatgc |
21124435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 34008574 - 34008622
Alignment:
| Q |
23 |
tgtaccaatagctgtcaactcgtacaccaagccgatatgcttcgaaaat |
71 |
Q |
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| T |
34008574 |
tgtaccaatagctgtcaactcgtacgccaagccaatatgcttcaaaaat |
34008622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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