View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3128_low_26 (Length: 313)
Name: NF3128_low_26
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 49683035 - 49682740
Alignment:
| Q |
11 |
catcatccttcaatggatttttctcgtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49683035 |
catcatccttcaatggatttttctcgtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaa |
49682936 |
T |
|
| Q |
111 |
ccccaaaagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttc |
210 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49682935 |
ccccaaaagtctaagaacgttgacatgcgaagttctattgatactcgcaacttcattaatgaaatcatccccgtcgccttttgattcacttaaaaccttc |
49682836 |
T |
|
| Q |
211 |
acagcaacaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttattttcttg |
306 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
49682835 |
acagcaacaacacgctcatcacgtaacctccctttgtatacacttccgaaccctccttggcctaatttgtttctaaaagagtttgttattttcttg |
49682740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 49710643 - 49710350
Alignment:
| Q |
12 |
atcatccttcaatggatttttctc---gtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacag |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49710643 |
atcatccttcaatggatttttctcttcgtatatgaacttctcaagagatccattaggcatgaattcgtatattagtgcctttttagaaccatccaaacag |
49710544 |
T |
|
| Q |
109 |
aaccccaaaagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaacct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||| |||||||||||| | |
|
|
| T |
49710543 |
aaccccaaaagtctaacaacgttgacatgcgaagttctactaatactcgcaacttcattaataaaatcttcgccgtcgccttttggttcacttaaaactt |
49710444 |
T |
|
| Q |
209 |
tcacagcaacaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttatttt |
302 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||| |||| |||||||||| ||||||| |||||||| |
|
|
| T |
49710443 |
tcactgcaacaatacgctcatcatttaacttccctttgtatacacttccgtaccctccttgtcctaatttgtttctaaaagagttagttatttt |
49710350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 49687939 - 49687642
Alignment:
| Q |
12 |
atcatccttcaatggatttttctc---gtatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacag |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49687939 |
atcatccttcaatggatttttctcttcgtatatgaacttctcaagatatccattagacatgaattcgtatattagtgcctttttagaaccatccaaacag |
49687840 |
T |
|
| Q |
109 |
aaccccaaaagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaacct |
208 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
49687839 |
aaccccaaaagcctaacaacattgatatgagaagttctactgatactcgcaacttcattaatgaaatcttcaccgtcaccttttgattcacttaaaacct |
49687740 |
T |
|
| Q |
209 |
tcacagcaacaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttattttcttg |
306 |
Q |
| |
|
|||| |||| ||||| |||||| |||| |||||| ||||||||||||||| ||||||||||||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
49687739 |
tcactgcaataacacactcatctggtaacttcccttggtatacacttccgaagcctccttggcctaatatgtttctaaaagagtgtgttattttcttg |
49687642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 49215338 - 49215045
Alignment:
| Q |
12 |
atcatccttcaatggatttttctcgt---atatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacag |
108 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
49215338 |
atcatccctcaatggatttttctcttcatatatgaacttctcaagagatccattaggcatgaattcatatattaatgcctttttagaattatccaaacag |
49215239 |
T |
|
| Q |
109 |
aaccccaaaagtctaacaacgttgacatgcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaacct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| || || ||||||||||||||||||||||| | |
|
|
| T |
49215238 |
aaccccaaaagtctaacaacgttgacatgtgaagttctactaatactcgcaacttcattaataaaatcttcgccatcgccttttgattcacttaaaactt |
49215139 |
T |
|
| Q |
209 |
tcacagcaacaacacgctcatcatgtaatctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttatttt |
302 |
Q |
| |
|
|||| ||||| | ||||||||||||||| ||||||||||||||| |||| ||||||| || |||| |||||||||| || |||| || ||||| |
|
|
| T |
49215138 |
tcactgcaactatacgctcatcatgtaacttccctttgtatacacctccgtaccctccctgacctaatttgtttctaaaaaagttggtcatttt |
49215045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 37 - 306
Target Start/End: Complemental strand, 49714257 - 49713988
Alignment:
| Q |
37 |
tatatgaacttctcaagagatccattaagcatgaattcgtatattagtgcctttttagaaccatccaaacagaaccccaaaagtctaacaacgttgacat |
136 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49714257 |
tatattaacttttcaagggatccattaggcatgaattcatatattagtgcctttttagaaccatccaaacagaaccccaaaagtctaacaacgttgacat |
49714158 |
T |
|
| Q |
137 |
gcgaagttctactgatactcgcaacttcgttaatgaaatcatccccgtcgccttttgattcacttaaaaccttcacagcaacaacacgctcatcatgtaa |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || | ||| ||||| |||||| ||||||||||||| ||||| | |||||||||||| |
|
|
| T |
49714157 |
gcgaagttctactgatactcgcaacttcgttgatgaaatcttcactgtcacctttggattcatttaaaaccttcaccgcaacggtattctcatcatgtaa |
49714058 |
T |
|
| Q |
237 |
tctccctttgtatacacttccgaaccctccttggcctagtttgtttctacaagagtttgttattttcttg |
306 |
Q |
| |
|
| ||||||||||||||||| | ||||| ||||| | ||| || | ||||||| |||||||||||| |
|
|
| T |
49714057 |
cttacctttgtatacacttccatatcctccctggcccaatttacttttgaaagagttcgttattttcttg |
49713988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University