View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_27 (Length: 298)
Name: NF3128_low_27
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 909711 - 909978
Alignment:
| Q |
19 |
gtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaata |
118 |
Q |
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| T |
909711 |
gtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaata |
909810 |
T |
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| Q |
119 |
agagggtatatgcatttcttatggaaatacatctcacataaagttaaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgca |
218 |
Q |
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| T |
909811 |
agagggtatatgcatttcttatggaaatatatctcacataaagttaaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgca |
909910 |
T |
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| Q |
219 |
ctttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcattatcttgactgtattc |
286 |
Q |
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| T |
909911 |
ctttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcattatcttgactgtattc |
909978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 662234 - 661967
Alignment:
| Q |
19 |
gtgcagtggtaggtttttagtttctatacaacgattctggcttaagagtttacaaattgaggttcctgaataaattgaactatgatttatatgtttaata |
118 |
Q |
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| T |
662234 |
gtgcagtggtagttttttagtttctatacaacgagtctggcttaggagtttgcaaattgagattcctgagtaaattgaactatgatttatatgtttacga |
662135 |
T |
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| Q |
119 |
agagggtatatgcatttcttatggaaatacatctcacataaagttaaactctgaatgtgatagaaaatgtttatgcttttttatacgactgatttttgca |
218 |
Q |
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| T |
662134 |
agagggtatatgaatttcttatggaaatatatctcacatgaagttaaactgtgaatgtgatagaaaatgtttatgcttttttatatgactgatttttgca |
662035 |
T |
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| Q |
219 |
ctttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcattatcttgactgtattc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
662034 |
ctttgttgatttttagtagatattggaaagcttgaaatgatgtaatcttcactgtcttgactgtattc |
661967 |
T |
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