View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3128_low_28 (Length: 285)
Name: NF3128_low_28
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 60 - 270
Target Start/End: Original strand, 4623649 - 4623856
Alignment:
| Q |
60 |
atcaaataatatataacaataatctcaagagagtcctactcacccatgctccaatgtatgtcccatctttattcttatctgtcatgaatcataccagaaa |
159 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623649 |
atcaaataagatgtaacaataatctcaagagagtcttactcacccatgctccaatgtatgtcccatctttattcttatctgtcatgaatcataccagaaa |
4623748 |
T |
|
| Q |
160 |
acaatttatgtcaaacaaggaatcatagcaaaaattgannnnnnnnctattaatgatttatgccatcttcattaggagtggtgagaaaggtgttcttgcc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
4623749 |
acaatttatgtcaaacaaggaatcatagcaaaaattga---tttttctattaatgatttatgccatcttcattaggagtggtgtgaaaggtgttcttacc |
4623845 |
T |
|
| Q |
260 |
tgttaaagtca |
270 |
Q |
| |
|
||||||||||| |
|
|
| T |
4623846 |
tgttaaagtca |
4623856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 4599198 - 4599374
Alignment:
| Q |
1 |
tattgtttagttaagagtactggtacaacttaatttgcgagtacaccatagaagtttccatcaaataatatataacaataatctcaagagagtcctactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
4599198 |
tattgtttagttaagagtactggtacaacttaatttgcgagtacatcatagaagtttccatcaaataatatataacaataattgcaagagagtcttactc |
4599297 |
T |
|
| Q |
101 |
acccatgctccaatgtatgtcccatctttattcttatctgtcatgaatcataccagaaaacaatttatgtcaaacaa |
177 |
Q |
| |
|
|||| || ||||| | |||||||| | ||||| ||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
4599298 |
acccttggtccaacgggcgtcccatcatgattctcatctgtcatgaatcatagaagaaaacaatttatagcaaacaa |
4599374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University