View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3128_low_3 (Length: 719)
Name: NF3128_low_3
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 639; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 11 - 702
Target Start/End: Complemental strand, 31189771 - 31189080
Alignment:
| Q |
11 |
cagagagaattacatctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189771 |
cagagagaattacatctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaat |
31189672 |
T |
|
| Q |
111 |
tttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31189671 |
tttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccaaaaaaagag |
31189572 |
T |
|
| Q |
211 |
agcattatttcgatgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189571 |
agcattatttcgatgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgttt |
31189472 |
T |
|
| Q |
311 |
atagttatggaatgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189471 |
atagttatggaatgatgttgctggaaatggttggtgggaggaaaaacattattgctgatgcaagtcacactagtgagatatactttccacattgggtata |
31189372 |
T |
|
| Q |
411 |
caataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
31189371 |
caataggctagagcttggcactaatctgagacctgatggggttatggatacagaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgc |
31189272 |
T |
|
| Q |
511 |
attcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatcttt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31189271 |
attcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatcttt |
31189172 |
T |
|
| Q |
611 |
cttcacctactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaac |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
31189171 |
cttcacctactaggtcaatatcagagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttttaatcaaagttgataac |
31189080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 23 - 702
Target Start/End: Complemental strand, 31201566 - 31200887
Alignment:
| Q |
23 |
catctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31201566 |
catctttgagttgggataatttgtatcaaattgcaaaaggaatagctcgtggactagagtacttgcatagaggatgtaccactcgaattttacatttcga |
31201467 |
T |
|
| Q |
123 |
cataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcg |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31201466 |
cataaaaccacataatattcttttagatgagaatttttgtccaaagatttcagattttggacttgcaaaactttgtccaaggaacgagagcattatttcg |
31201367 |
T |
|
| Q |
223 |
atgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaa |
322 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
31201366 |
atgtcagatcaaagagggactatgggatatgtagctccagaaatgtggaatagacattttggaggagtttcatacaagtccgatgtttatagttatggaa |
31201267 |
T |
|
| Q |
323 |
tgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctaga |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||| || |
|
|
| T |
31201266 |
tgatgttgctggaaatggttggagggaggaaaaacattaatgctgatgcaagtctcacaagtgagatatactttcctcactgggtatacaataggcttga |
31201167 |
T |
|
| Q |
423 |
gcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacattt |
522 |
Q |
| |
|
|||||| | |||| ||||||||||||| |||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201166 |
gcttggtagtaatttgagacctgatggagttatggatacagaagaagacaagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacattt |
31201067 |
T |
|
| Q |
523 |
ccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctacta |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201066 |
ccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctacta |
31200967 |
T |
|
| Q |
623 |
ggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaac |
702 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200966 |
ggtcaatatcagagtcttttaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagttggtaac |
31200887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Complemental strand, 31145706 - 31145073
Alignment:
| Q |
18 |
aattacatctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacat |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31145706 |
aattgcatctttgagttgggagaatttgtatcaaattgcaaaagggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacat |
31145607 |
T |
|
| Q |
118 |
ttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcatta |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31145606 |
tttgacataaaaccacataacattcttttagatgaaaacttatgtccaaagatttcagattttggacttgcaaaactctgtccaaaacaagagagcatta |
31145507 |
T |
|
| Q |
218 |
tttcgatgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagtta |
317 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145506 |
tttcaatgtcagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagtta |
31145407 |
T |
|
| Q |
318 |
tggaatgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaatagg |
417 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31145406 |
tggaatgatgttgctagaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaatagg |
31145307 |
T |
|
| Q |
418 |
ctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31145306 |
ctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaa |
31145207 |
T |
|
| Q |
518 |
catttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||| || |
|
|
| T |
31145206 |
catttccaagtgatagacctacaatgagtaaagttattgaaatgttagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcc |
31145107 |
T |
|
| Q |
618 |
tactaggtcaatatcagagtcttctaagtcttaa |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31145106 |
tactaggtcaatatcagagtcttctaagtcttaa |
31145073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 642
Target Start/End: Complemental strand, 31172019 - 31171395
Alignment:
| Q |
18 |
aattacatctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacat |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31172019 |
aattgcatctttgagttgggagaatttgtatcaaattgcaaaagggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacat |
31171920 |
T |
|
| Q |
118 |
ttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcatta |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31171919 |
tttgacataaaaccacataacattcttttagatgaaaacttatgtccaaagatttcagattttggacttgcaaaactctgtccaaaacaagagagcatta |
31171820 |
T |
|
| Q |
218 |
tttcgatgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagtta |
317 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171819 |
tttcaatgtcagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagtta |
31171720 |
T |
|
| Q |
318 |
tggaatgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaatagg |
417 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31171719 |
tggaatgatgttgctagaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaatagg |
31171620 |
T |
|
| Q |
418 |
ctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31171619 |
ctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaa |
31171520 |
T |
|
| Q |
518 |
catttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| ||||||| | ||| || || |
|
|
| T |
31171519 |
catttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcc |
31171420 |
T |
|
| Q |
618 |
tactaggtcaatatcagagtcttct |
642 |
Q |
| |
|
||||| ||| |||||||||||||| |
|
|
| T |
31171419 |
cactagatcagtatcagagtcttct |
31171395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Original strand, 31224385 - 31225039
Alignment:
| Q |
18 |
aattacatctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacat |
117 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
31224385 |
aattgcatctttgagttgggataaattgtataaaattgcaaaagggatagctcgtggactagagtacttgcatggaggatgtaccactagaattttacat |
31224484 |
T |
|
| Q |
118 |
ttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcatta |
217 |
Q |
| |
|
|| |||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
31224485 |
tttgacataaaaccacacaacatccttttagatgataatttatgtccgaagatttcagattttggacttgcaaaactatgtctcaggaaagaaagcattg |
31224584 |
T |
|
| Q |
218 |
tttcgatgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagtta |
317 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31224585 |
tttcaatgtcagatcaaagaggaacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagtta |
31224684 |
T |
|
| Q |
318 |
tggaatgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaatagg |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
31224685 |
tggaatgatattgctggaaatggttggagggaggaaaaacattaatgctgatgcaagtcgcacaagtgagatatattttcctcattgggtatacaaaagg |
31224784 |
T |
|
| Q |
418 |
ctagagcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaa |
517 |
Q |
| |
|
|| ||||||| | | || | ||||||||||| | |||||||||||||||||| |||| || ||||||||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
31224785 |
cttgagcttgctagtgattttagacctgatggaataatggatacagaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaa |
31224884 |
T |
|
| Q |
518 |
catttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacc |
617 |
Q |
| |
|
| ||||| | |||||| |||||||||||||||||||||||||||||||| |||| |||||||| | ||||| ||||| ||||||| |||||||| || |
|
|
| T |
31224885 |
cgtttcctaatgataggcctacaatgagtaaagtgattgaaatgttagatgttagcatgaattcgttggaaatgccaccaaaaccattgctttcttctcc |
31224984 |
T |
|
| Q |
618 |
tactaggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataatt |
672 |
Q |
| |
|
||||| || ||||||||||||| | ||| ||| || |||||||| || ||||| |
|
|
| T |
31224985 |
gactagatctgtatcagagtcttccacgtcctaaaatctgagggtatgtgtaatt |
31225039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 24 - 690
Target Start/End: Original strand, 30960886 - 30961551
Alignment:
| Q |
24 |
atctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgac |
123 |
Q |
| |
|
|||||| ||||||||| || || |||||||||| ||||||||||||||||| ||||| || ||||||||||||||| | || ||||||||||||| ||| |
|
|
| T |
30960886 |
atctttaagttgggatgatatgcatcaaattgcgaaagggatagcccgtgggctagaatatttgcatagaggatgtgctactcgaattttacattttgac |
30960985 |
T |
|
| Q |
124 |
ataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| || || | || |||||| |||||| |
|
|
| T |
30960986 |
ataaaaccacataacattcttttagatgagaatttttgtccaaagatctcagattttggactggcaaagctttgcctgaagaaagacagcattgtttcga |
30961085 |
T |
|
| Q |
224 |
tgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaat |
323 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30961086 |
tgtcggatcaaagagggacaatggggtatgtagctcctgaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaat |
30961185 |
T |
|
| Q |
324 |
gatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagag |
423 |
Q |
| |
|
||||||| | |||||||| || || ||||||| || | ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
30961186 |
gatgttgttagaaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttgaa |
30961285 |
T |
|
| Q |
424 |
cttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttc |
523 |
Q |
| |
|
||||| | | || |||||||||||||||| | |||||||||||| ||||||| || | ||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
30961286 |
cttggtagtgatttgagacctgatggggtaactgatacagaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttc |
30961385 |
T |
|
| Q |
524 |
caagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
623 |
Q |
| |
|
| | || || ||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
30961386 |
ctaatggcaggcctacaatgagtaaagtagttgaaatgttagaagttaacatgaattcattggaaataccaccaaaaccattgctttcgtctcctactag |
30961485 |
T |
|
| Q |
624 |
gtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatc |
690 |
Q |
| |
|
||| |||||||||||| | ||||||| |||||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
30961486 |
atcattatcagagtcttgcacgtcttaa-atttgacggtatgtaaaattgttatatactttttaatc |
30961551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 23 - 695
Target Start/End: Original strand, 30992367 - 30993038
Alignment:
| Q |
23 |
catctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcga |
122 |
Q |
| |
|
||||||| |||||||||||| || |||||||||| ||||||||||||||||| ||||| || ||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
30992367 |
catctttaagttgggataatatgcatcaaattgcgaaagggatagcccgtgggctagaatatttgcatagaggatgtgccactcgaattttacattttga |
30992466 |
T |
|
| Q |
123 |
cataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| || || | || |||||| ||||| |
|
|
| T |
30992467 |
cataaaaccacataacattcttttagatgagaatttttgtccaaagatctcagattttggactggcaaagctttgcctgaagaaagacagcattgtttcg |
30992566 |
T |
|
| Q |
223 |
atgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaa |
322 |
Q |
| |
|
||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30992567 |
atgtcggatcaaagagggacaatggggtatgtagctccagaagtgtggaatagacattttggaggagtttcacacaagtctgatgtttatagttatggaa |
30992666 |
T |
|
| Q |
323 |
tgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctaga |
422 |
Q |
| |
|
|||||||| | |||||||| || || ||||||| || | ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
30992667 |
tgatgttgttagaaatggtgggtggacggaaaaatattaatgcggatgcaagtcacacaagtgagatatactttcctcattgggtatacaataggcttga |
30992766 |
T |
|
| Q |
423 |
gcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacattt |
522 |
Q |
| |
|
||||| | | || |||||||||||||||| |||||||| |||||||||||||| || | ||| ||||| |||||| |||| ||||| |||||||||||| |
|
|
| T |
30992767 |
acttggtagttatttgagacctgatggggtaatggatacggaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacattt |
30992866 |
T |
|
| Q |
523 |
ccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctacta |
622 |
Q |
| |
|
|| | || |||||||||||||||||||| ||||||||||||||||| |||| |||| | ||||||||||| ||||||| ||||| || ||||||| |
|
|
| T |
30992867 |
cctaatggcagacctacaatgagtaaagtagttgaaatgttagaagttgacattaattcgttggaaataccaccaaaaccattgctttcgtctcctacta |
30992966 |
T |
|
| Q |
623 |
ggtcaatatcagagtcttctaagtcttaatatttgagggtaagtataattgttatatatcttttaatcagagt |
695 |
Q |
| |
|
| ||| |||||||||||| | |||||| ||||||| || ||||||||||| |||| |||| |||||||| |
|
|
| T |
30992967 |
gatcagtatcagagtcttgcacttcttaa-atttgagaatatgtataattgttgtatacttttttatcagagt |
30993038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 623
Target Start/End: Original strand, 31229670 - 31230270
Alignment:
| Q |
23 |
catctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcga |
122 |
Q |
| |
|
||||| |||||||||| | | | ||||||||||| ||||||||||| || || || ||||||||||||| ||||||| ||| |||| |||||||| || |
|
|
| T |
31229670 |
catctctgagttgggacattctttatcaaattgcgaaagggatagctcgagggcttgagtacttgcataagggatgtagcacttgaatcttacattttga |
31229769 |
T |
|
| Q |
123 |
cataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcg |
222 |
Q |
| |
|
||| |||||||||||||| || ||| |||||||||| |||||||| || ||||||||||||||| ||| ||| || | |||||||||||||| |
|
|
| T |
31229770 |
catcaaaccacataacatcctcttatatgagaatttttgtccaaagatatcagattttggactttcaagactttgccataagaaagagagcattatttct |
31229869 |
T |
|
| Q |
223 |
atgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaa |
322 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||| || | ||||||| | |||||||| ||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
31229870 |
atgtcagacgctagagggacaatggggtatgtagctcctgagttatggaatataaattttggatgagtttcgcacaagtctgacgtttatagttatggaa |
31229969 |
T |
|
| Q |
323 |
tgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctaga |
422 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | || ||||||||||| || ||||||||||||||||| |||||||||||||| | || || |
|
|
| T |
31229970 |
tgatgttgctagaaatggttggtgggaggaaaaacattaacgccgatgcaagtcaaacaagtgagatatactttcctcattgggtatacaagaatcttga |
31230069 |
T |
|
| Q |
423 |
gcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacattt |
522 |
Q |
| |
|
|| ||| | || ||||||| || | || || | | ||||||||||| || || |||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
31230070 |
tctacgcaatgatttgagaccggacgaagtgattgtctcggaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacattt |
31230169 |
T |
|
| Q |
523 |
ccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctacta |
622 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||||||||||||| |||| ||||| | ||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
31230170 |
ccaaatgatagaccaacaatgagtagagtgattgaaatgttagaaggcaacaagaattgtttggaaataccaccaaaacctattctttcttctcctacta |
31230269 |
T |
|
| Q |
623 |
g |
623 |
Q |
| |
|
| |
|
|
| T |
31230270 |
g |
31230270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 23 - 623
Target Start/End: Original strand, 30955140 - 30955737
Alignment:
| Q |
23 |
catctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcga |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| || || | ||||| |||||||| ||||||| || | ||||||||||| || |
|
|
| T |
30955140 |
catctttgagttgggataatttctatcaaattgccaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttga |
30955239 |
T |
|
| Q |
123 |
cataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||| | |
|
|
| T |
30955240 |
tataaaaccacataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcgagaaagagagcactatattc |
30955339 |
T |
|
| Q |
223 |
atgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaa |
322 |
Q |
| |
|
||| || || |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30955340 |
atgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaa |
30955439 |
T |
|
| Q |
323 |
tgatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctaga |
422 |
Q |
| |
|
||||| | | || |||||||||| ||| || || || || | || ||| ||| ||||| ||| || |||||| ||||| ||||||||| |||||| |
|
|
| T |
30955440 |
tgatgcttttagagatggttggagtgagaaacaatattgatgttaatacaaatcaaactagcgag---tattttccagattggatatacaataagctaga |
30955536 |
T |
|
| Q |
423 |
gcttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacattt |
522 |
Q |
| |
|
| | | || |||||||||| || |||| | |||||| ||||||| || | ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
30955537 |
aaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattg |
30955636 |
T |
|
| Q |
523 |
ccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctacta |
622 |
Q |
| |
|
|||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | |||||||||||||| ||||| | ||||||| ||||||| |
|
|
| T |
30955637 |
ccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctacta |
30955736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 24 - 568
Target Start/End: Original strand, 31214122 - 31214663
Alignment:
| Q |
24 |
atctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgac |
123 |
Q |
| |
|
|||| |||||||||| | | | ||| ||||||| ||||||||||| || || | |||||| ||||||||||||| | || ||||||||||||| || |
|
|
| T |
31214122 |
atctctgagttgggagattctttatgaaattgctaaagggatagctcgagggttggagtacctgcatagaggatgcagtactcgaattttacattttgat |
31214221 |
T |
|
| Q |
124 |
ataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcga |
223 |
Q |
| |
|
|||||||||||||| ||| | |||||||| ||||| |||||||| || ||||||||||||||||||| ||| |||| || ||||||||||||| |
|
|
| T |
31214222 |
ataaaaccacataatattttattagatgaaaatttttgtccaaagatatcagattttggacttgcaagactttgtctcaagaaagaaagcattatttcga |
31214321 |
T |
|
| Q |
224 |
tgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaat |
323 |
Q |
| |
|
|| ||| | ||||| || ||||||||||||||||| || ||||||||||| | |||||||| ||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
31214322 |
tgtcaggtgctagaggaacgatgggatatgtagctcctgagttgtggaatagaaactttggaggcgtttcgtacaagtctgatgtttatagttacggaat |
31214421 |
T |
|
| Q |
324 |
gatgttgctggaaatggttggagggaggaaaaacatcattgctgatgcaagtcacactagtgagatatactttccacattgggtatacaataggctagag |
423 |
Q |
| |
|
||||||| ||||||| | ||||| ||||||||||| | ||| |||||||||| || ||||||| ||||||||| ||||||||||||| ||| | || |
|
|
| T |
31214422 |
gatgttgttggaaataatcggaggaaggaaaaacattagtgccaatgcaagtcatacaagtgagaaatactttcctgattgggtatacaaaaggtttgat |
31214521 |
T |
|
| Q |
424 |
cttggcactaatctgagacctgatggggttatggatacagaagaagatgagatcgcgaggagaatgacaattgtgggtttatggtgcattcaaacatttc |
523 |
Q |
| |
|
|| | |||| || |||||| |||| || || | || ||| ||||| ||||| | ||||||||| || || || |||||||||||||||||| ||| |
|
|
| T |
31214522 |
ctagacactgatttgagacacgatgaagtgattgccac---agatgatgacatcgcaaagagaatgaccatagtaggattatggtgcattcaaacacttc |
31214618 |
T |
|
| Q |
524 |
caagtgatagacctacaatgagtaaagtgattgaaatgttagaag |
568 |
Q |
| |
|
||| |||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
31214619 |
caaatgatagacctgcaatgagtagagttattgaaatgttagaag |
31214663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 30944880 - 30945184
Alignment:
| Q |
23 |
catctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcga |
122 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||| || | | ||||| |||||||| || |||| | | ||||||||||| || |
|
|
| T |
30944880 |
catctttaagttgggataatttgtatcaaattgccaaagggatagctcgaagtttggagtatttgcatagggggtgtaatatccggattttacattttga |
30944979 |
T |
|
| Q |
123 |
cataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcg |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
30944980 |
cataaaaccgcataacattcttttagatgaaaatttatgtccaaagatttcagattttggacttgcaaagctctgtctcaagaaagagagcactattttc |
30945079 |
T |
|
| Q |
223 |
atgacagatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaa |
322 |
Q |
| |
|
||| || || |||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30945080 |
atgtcaaatgcaagaggaacagtcggatatgtagctccagaagtatggaatagacaatttggaggagtttcacacaagtctgatgtttatagttatggaa |
30945179 |
T |
|
| Q |
323 |
tgatg |
327 |
Q |
| |
|
||||| |
|
|
| T |
30945180 |
tgatg |
30945184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 485 - 602
Target Start/End: Original strand, 30945339 - 30945456
Alignment:
| Q |
485 |
gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact |
584 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | || |
|
|
| T |
30945339 |
gaatgactattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatatcct |
30945438 |
T |
|
| Q |
585 |
tgaaataccacctaaacc |
602 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
30945439 |
tgaaataccaccaaaacc |
30945456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 30986203 - 30986279
Alignment:
| Q |
23 |
catctttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgt |
99 |
Q |
| |
|
||||||| |||||||||||| || |||||||||| ||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
30986203 |
catctttaagttgggataatatgcatcaaattgcgaaagggatagcccgtgggctagaatatttgcatagaggatgt |
30986279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 657 - 695
Target Start/End: Complemental strand, 31145043 - 31145005
Alignment:
| Q |
657 |
gagggtaagtataattgttatatatcttttaatcagagt |
695 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
31145043 |
gagggtaagtataattgttatatatattttaaacagagt |
31145005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 353
Target Start/End: Original strand, 44035561 - 44035886
Alignment:
| Q |
28 |
ttgagttgggataatttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataa |
127 |
Q |
| |
|
||||||||||| ||||| | || ||||||| ||||||||| || ||||||||||||||||||| ||| || | ||| || ||||| ||||||||||| | |
|
|
| T |
44035561 |
ttgagttgggagaatttacaccagattgcaatagggatagctcgaggactagagtacttgcataaagggtgcaacactaggatttttcatttcgacatta |
44035660 |
T |
|
| Q |
128 |
aaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaactctgtccnnnnnnngagagcattatttcgatgac |
227 |
Q |
| |
|
||||||||||||||||||| || || | || |||| || || || |||||||||||||| ||||| | | |||||||||||||| ||| | |
|
|
| T |
44035661 |
aaccacataacattcttttggacgaaacttaccgtcccaagatatctgattttggacttgctaaactaagcacaagcaatgagagcattatttcaatgtc |
44035760 |
T |
|
| Q |
228 |
agatcaaagagggacaatgggatatgtagctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
327 |
Q |
| |
|
| | |||||||| | || ||||| ||||| ||||| | || | | ||| || || |||||||| || |||||||| |||||||| ||||||||| |
|
|
| T |
44035761 |
aaacgctagagggactgttgggtatgttgctcctgaagttttcaacaaaagtttcgggggcgtttcacataagtctgatgtctatagttacggaatgatg |
44035860 |
T |
|
| Q |
328 |
ttgctggaaatggttggagggaggaa |
353 |
Q |
| |
|
||||| ||||||||||| ||| |||| |
|
|
| T |
44035861 |
ttgctagaaatggttggtgggcggaa |
44035886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 44036041 - 44036105
Alignment:
| Q |
499 |
ggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgtt |
563 |
Q |
| |
|
||||| ||||||||||||||| |||| | | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
44036041 |
ggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgtt |
44036105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 49710692 - 49710811
Alignment:
| Q |
70 |
cgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatga-gaatttatgtccaaaa |
168 |
Q |
| |
|
|||||||||||||||||||| ||||| || | ||| ||||| || ||||| ||||||||||| ||||| || | ||||||| ||||| ||||||||| |
|
|
| T |
49710692 |
cgtggactagagtacttgcacagaggctgcaacactagaatcttgcattttgacataaaacctcataatatattactagatgattaatttttgtccaaaa |
49710791 |
T |
|
| Q |
169 |
atttcagattttggacttgc |
188 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49710792 |
atttcagattttggacttgc |
49710811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 49725145 - 49725231
Alignment:
| Q |
106 |
agaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaa |
192 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| || | |||||| |||||||||||||||||| |
|
|
| T |
49725145 |
agaattttgcattttgacataaaacctcataacattcttttggatgagaatttcaaccccagaatttcggattttggacttgcaaaa |
49725231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 49215355 - 49215473
Alignment:
| Q |
70 |
cgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaa |
169 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| ||| ||||| || ||||| ||||||| ||| ||||| || | ||| ||| |||| ||||| |||| |
|
|
| T |
49215355 |
cgtggattagagtacttgcacagaggctgtaacactagaatcttgcattttgacataagacctcataatatattactagctgatgatttttgtccgaaaa |
49215454 |
T |
|
| Q |
170 |
tttcagattttggacttgc |
188 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49215455 |
tttcagattttggacttgc |
49215473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 49687989 - 49688107
Alignment:
| Q |
70 |
cgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaa |
169 |
Q |
| |
|
|||||||||||||| || | |||||| || | ||| ||||| |||||||| ||||||||||| ||||| || | | ||||||||||| || ||||||| |
|
|
| T |
49687989 |
cgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgatgagaatttctgcccaaaaa |
49688088 |
T |
|
| Q |
170 |
tttcagattttggacttgc |
188 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
49688089 |
attctgattttggacttgc |
49688107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 49683090 - 49683201
Alignment:
| Q |
77 |
tagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcaga |
176 |
Q |
| |
|
|||||||| |||| ||||| || | ||| ||||| |||||||| ||||||||||| ||||| || | | || || |||| ||||||||||||||||| |
|
|
| T |
49683090 |
tagagtacatgcacagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgacgatgatttgtgtccaaaaatttcaga |
49683189 |
T |
|
| Q |
177 |
ttttggacttgc |
188 |
Q |
| |
|
|||||||||||| |
|
|
| T |
49683190 |
ttttggacttgc |
49683201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 49714341 - 49714452
Alignment:
| Q |
77 |
tagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcaga |
176 |
Q |
| |
|
||||||||||||| ||||| |||| ||| ||||| |||||||| ||||| ||||| ||||| || | | ||||| |||| ||||| ||||||||||| |
|
|
| T |
49714341 |
tagagtacttgcacagaggctgtaacactagaatcttacattttgacattaaacctcataatatattacttgatgaagatttctgtcctaaaatttcaga |
49714440 |
T |
|
| Q |
177 |
ttttggacttgc |
188 |
Q |
| |
|
||| |||||||| |
|
|
| T |
49714441 |
tttcggacttgc |
49714452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 10906998 - 10907039
Alignment:
| Q |
296 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
337 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10906998 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10907039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 10930881 - 10930922
Alignment:
| Q |
296 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
337 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10930881 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10930922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 10993085 - 10993126
Alignment:
| Q |
296 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
337 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10993085 |
acaaatcagatgtttatagttatggaatgatgttgcttgaaa |
10993126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 49215559 - 49215612
Alignment:
| Q |
274 |
agacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
327 |
Q |
| |
|
||||||||||| || || ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
49215559 |
agacattttggtggggtgtcacataaatcagatgtttatagttatggaatgatg |
49215612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 11041245 - 11041285
Alignment:
| Q |
297 |
caaatctgatgtttatagttatggaatgatgttgctggaaa |
337 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11041245 |
caaatcggatgtttatagttatggaatgatgttgcttgaaa |
11041285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 49683286 - 49683357
Alignment:
| Q |
273 |
tagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttgg |
344 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| || ||||||||||||||| | | ||||||||||| |
|
|
| T |
49683286 |
tagacattttggtggggtgtcacacaaatcagatgtctacagttatggaatgatggttttagaaatggttgg |
49683357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 49725317 - 49725400
Alignment:
| Q |
278 |
attttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaaaaacatca |
361 |
Q |
| |
|
||||||| | ||| ||||| || || |||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||| |
|
|
| T |
49725317 |
attttggtgcagtgtcacataagtcagatgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacatca |
49725400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 49728717 - 49728788
Alignment:
| Q |
256 |
gctccagaagtgtggaatagacattttggaggagtttcacacaaatctgatgtttatagttatggaatgatg |
327 |
Q |
| |
|
||||||||||||| |||| ||||||| || || || |||||||||||||| |||||||||||||||||| |
|
|
| T |
49728717 |
gctccagaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatg |
49728788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 9125151 - 9125105
Alignment:
| Q |
301 |
tctgatgtttatagttatggaatgatgttgctggaaatggttggagg |
347 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
9125151 |
tctgatatttatagttatgggatgttgttgctggaattggttggagg |
9125105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 11026541 - 11026582
Alignment:
| Q |
296 |
acaaatctgatgtttatagttatggaatgatgttgctggaaa |
337 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
11026541 |
acaaatcagatgtttacagttatggaatgatgttgcttgaaa |
11026582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 31618566 - 31618457
Alignment:
| Q |
76 |
ctagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaatttcag |
175 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||| ||||| | || |||||||| || ||||||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
31618566 |
ctagagtacttgcatcaaggatgtagttcaaggattctacatcttgatataaaacctcaaaacattcttttggatgaagatttttgtccaaaaatctcag |
31618467 |
T |
|
| Q |
176 |
attttggact |
185 |
Q |
| |
|
|||||||||| |
|
|
| T |
31618466 |
attttggact |
31618457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 31541351 - 31541209
Alignment:
| Q |
43 |
ttgtatcaaattgcaaaagggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattc |
142 |
Q |
| |
|
||||| |||||||||| || || || || |||||||| ||||||||| |||||||| |||||||||| ||| | || || |||||||| ||||||| |
|
|
| T |
31541351 |
ttgtaccaaattgcaatcggaattgctcgaggactagaatacttgcatcaaggatgtatttcaagaattttgcatcttgatatcaaaccacaaaacattc |
31541252 |
T |
|
| Q |
143 |
ttttagatgagaatttatgtccaaaaatttcagattttggact |
185 |
Q |
| |
|
|||| ||||| ||||| || || ||||| || ||||||||||| |
|
|
| T |
31541251 |
ttttggatgaaaatttttgccccaaaatctctgattttggact |
31541209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 31438946 - 31439055
Alignment:
| Q |
73 |
ggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaattt |
172 |
Q |
| |
|
|||||||||||||| ||| ||| |||| |||||||||| ||| | || || ||||| || ||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
31438946 |
ggactagagtacttacatcaaggttgtatttcaagaattttgcatcttgatatcaaacctcaaaacattcttttagatgaagatttttgtccaaaaatat |
31439045 |
T |
|
| Q |
173 |
cagattttgg |
182 |
Q |
| |
|
| |||||||| |
|
|
| T |
31439046 |
ctgattttgg |
31439055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 31614633 - 31614566
Alignment:
| Q |
280 |
tttggaggagtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggagg |
347 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||| || | || |||||| ||||||| |
|
|
| T |
31614633 |
tttggcggagtttcttacaaatctgatgtatatagttatggaatgttgattcttgaaatgattggagg |
31614566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 31585655 - 31585590
Alignment:
| Q |
127 |
aaaccacataacattcttttagatgagaatttatgtccaaaaatttcagattttggacttgcaaaa |
192 |
Q |
| |
|
||||| || ||||||||||| ||||| |||| ||||||||||| || ||||||||||| |||||| |
|
|
| T |
31585655 |
aaaccccaaaacattcttttggatgaagatttttgtccaaaaatatctgattttggactagcaaaa |
31585590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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