View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_30 (Length: 272)
Name: NF3128_low_30
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_30 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 13885433 - 13885671
Alignment:
| Q |
13 |
gagatcgttgggaatcaccttgtgaattttcaatgtcacctttgccgaacagtattgaatcagtgagaattggtggcgaaacagaagatggttgagaaac |
112 |
Q |
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| T |
13885433 |
gagattgttgggaatcaccctgtgaattttcaatg---------ccgagcagtattgattcaatgagaattgccgttgaaacagaagatggttgagaaac |
13885523 |
T |
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| Q |
113 |
ttcgacaatgtcgcgaacttcctcttcatgttcctccgatagtgggacttatgtgttgttggcaggtggtatgttagacctatttgatgacaattccttc |
212 |
Q |
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| T |
13885524 |
ttcgacaatgtcgtgaacttcctcttcacattcctccgatagtgagactt------------caggtggtatgttagacctatttgatgacaattccttc |
13885611 |
T |
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| Q |
213 |
ttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatat |
272 |
Q |
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| T |
13885612 |
ttgtactctttttcaaaacgagatgttttgatattgctacgaatatcagaattaatatat |
13885671 |
T |
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Back To:
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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 29092162 - 29092063
Alignment:
| Q |
173 |
ggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatat |
272 |
Q |
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| T |
29092162 |
ggcaggaggcatgatagatctatttgatgacaattccttcttgtactctttttcgaaacgagatgttttgatattgctatgaatatctggattaatatat |
29092063 |
T |
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