View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_34 (Length: 253)
Name: NF3128_low_34
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 1240156 - 1240401
Alignment:
| Q |
8 |
tgagatgaatatgattttgtgagcaagttctacaaagaaagaaggtaggattatgtatgctaagtatctgaatgctttctctagctcgcgggcgtagcca |
107 |
Q |
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| T |
1240156 |
tgagaagaatatgattttgtgagcaagttctacaaagaaagaaggtaggattatgtatgctaagtatctgaatgctttctctagctcgcgggcgtagccg |
1240255 |
T |
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| Q |
108 |
cgacgaacatatgtagtgtcatcttgcagtgcatctaagaatagaagttgccttaggccatacctgcaccataacacattacatggtttagagtatatgt |
207 |
Q |
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| T |
1240256 |
cgacgaacatatgtagtgtcatcttgcagtgcatctaagaatagaagttgccttaggccatacctgcaccataacacattacatggtttagagtatatgt |
1240355 |
T |
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| Q |
208 |
ttgtaatgtagggtggccctgagggcgggatggaggggcagcagcc |
253 |
Q |
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| T |
1240356 |
ttgtaacgtagggtggccctgagggcgggatggaggggcggcagcc |
1240401 |
T |
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