View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_35 (Length: 251)
Name: NF3128_low_35
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31935403 - 31935179
Alignment:
| Q |
1 |
agagattagagataacttatggaagaaattaaactacttatatattattttgaaataatatctaatacaaacgcatactgagagctaaactatgtaagta |
100 |
Q |
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| T |
31935403 |
agagattagagataacttatggaagaaattaaactacttatatattattttgaaataatatctaatacaaacgcata-tgagagctaaactttgta---- |
31935309 |
T |
|
| Q |
101 |
tgtatagcccatattatatattatgagagcaacttgagaaacatgatatctcttatgactaattttctaactaacttcaaaccatgaattaacacttcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31935308 |
----tagcccatattatatattatgagagcaacttgagaaacatgttatctcttatgactaattttctaactaacttcaaaccatgaattaacacttcta |
31935213 |
T |
|
| Q |
201 |
acaatacaaaatgtaccttctctaatctaaattt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31935212 |
acaatacaaaatgtaccttctctaatctaaattt |
31935179 |
T |
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