View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_38 (Length: 250)
Name: NF3128_low_38
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_38 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 6941312 - 6941052
Alignment:
| Q |
5 |
ggtagattattctctgtgtgcatgtttggattaactggcctattgtgttttgattcacggttaatttgatagaattgtaataattttgtcaannnnnnnn |
104 |
Q |
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| T |
6941312 |
ggtaaattactctctgtgtgcatgtttggattaaccgacctattctgttttgattcacggttaatttgatagaattgtgataattttgtcaatttttttt |
6941213 |
T |
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| Q |
105 |
nnnnnn-aatttcaacaaaatcagatgctaatttcacaaactcgttgtcaatatcttccc--------------gtttttcttcccaccttttaatcatt |
189 |
Q |
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| T |
6941212 |
tttttttaatttcaacaaaatcagatgctaatttcacaaactcgttgtcaatatcttcccttatttttgtatgtgtttttcttcccaccttttaatcatt |
6941113 |
T |
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| Q |
190 |
agaatatctatggactgtgttctatatgtgtcaatgtgtgtcctatctgaaattacttaaa |
250 |
Q |
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| T |
6941112 |
agaatatctatggactgtgttctatatgtgtcaatgtgtgtcctatctgaaattacttaaa |
6941052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 6944518 - 6944272
Alignment:
| Q |
15 |
tctctgtgtgcatgtttggattaactggcctattgtgttttgattcacggttaatttgatagaattgtaataattttgtcaannnnnnnnnnnnnnaatt |
114 |
Q |
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| T |
6944518 |
tctctgtgtgcatgtttggattaaccgatctattgtgttttgattcacggttaatttgatagaattgtgataattttgtcaattttttttttt---aatt |
6944422 |
T |
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| Q |
115 |
tcaacaaaatcagatgctaatttcacaaactcgttgtcaatatcttccc--------------gtttttcttcccaccttttaatcattagaatatctat |
200 |
Q |
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| T |
6944421 |
tcaacaaaatcagatgctaatttcacaaactcgttgtcaatatcttcccttatttttgtatgtgtttttcttcccaccttttaatcattagaatatctct |
6944322 |
T |
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| Q |
201 |
ggactgtgttctatatgtgtcaatgtgtgtcctatctgaaattacttaaa |
250 |
Q |
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| T |
6944321 |
ggactgtgttctatatgtgtcaatgtgtgtcctatctgaaattacttaaa |
6944272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 6531185 - 6531252
Alignment:
| Q |
5 |
ggtagattattctctgtgtgcatgtttggattaactggcctattgtgttttgattcacggttaatttg |
72 |
Q |
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| T |
6531185 |
ggtaaattactctctgtgtgcatgtttggattaaccggcctattgtgttttgattcacggtgaatttg |
6531252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 6410623 - 6410733
Alignment:
| Q |
48 |
tgtgttttgattcacggttaatttgatagaattgtaataattttgtcaannnnnnnnnnnnnnaatttcaacaaaatcagatgctaatttcacaaactcg |
147 |
Q |
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| T |
6410623 |
tgtgttttgattccaggtgaatttgatagaattgtgataattttgtcaaaatttatacttttgaatttcaacaaaatcagatgctgatttcacaaactcg |
6410722 |
T |
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| Q |
148 |
ttgtcaatatc |
158 |
Q |
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| T |
6410723 |
ttgttaatatc |
6410733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 6531356 - 6531412
Alignment:
| Q |
164 |
gtttttcttcccaccttttaatcattagaatatctatggactgtgttctatatgtgt |
220 |
Q |
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| T |
6531356 |
gtttttcttcccaccttttaatcattacaatatatatggattgtgttctatgtgtgt |
6531412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 6782999 - 6783059
Alignment:
| Q |
5 |
ggtagattattctctgtgtgcatgtttggattaactggcctattgtgttttgattcacggt |
65 |
Q |
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| T |
6782999 |
ggtaaattactctctgtgtacatgtttggattaaccgatctattgtgttttgattcacggt |
6783059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 6797491 - 6797542
Alignment:
| Q |
169 |
tcttcccaccttttaatcattagaatatctatggactgtgttctatatgtgt |
220 |
Q |
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| T |
6797491 |
tcttcccatcttttgatcattggaatatctatggattgtgttctatatgtgt |
6797542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 6799208 - 6799257
Alignment:
| Q |
47 |
ttgtgttttgattcacggttaatttgatagaattgtaataattttgtcaa |
96 |
Q |
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| T |
6799208 |
ttgtgttttgattcccggtgaatttgatagaattgtggtaattttgtcaa |
6799257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 6799368 - 6799422
Alignment:
| Q |
164 |
gtttttcttcccaccttttaatcattagaatatctatggactgtgttctatatgt |
218 |
Q |
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| T |
6799368 |
gtttctcttcccatattttgatcattaaaatatctatggattgtgttctatatgt |
6799422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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