View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_low_4 (Length: 519)

Name: NF3128_low_4
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_low_4
NF3128_low_4
[»] chr8 (5 HSPs)
chr8 (35-247)||(9891545-9891757)
chr8 (243-382)||(9891792-9891921)
chr8 (409-467)||(9891982-9892040)
chr8 (53-135)||(17220198-17220280)
chr8 (466-494)||(8051935-8051963)
[»] chr4 (17 HSPs)
chr4 (24-225)||(3671048-3671249)
chr4 (272-502)||(3670750-3670982)
chr4 (55-218)||(52982885-52983048)
chr4 (53-192)||(54860810-54860949)
chr4 (53-207)||(55657369-55657523)
chr4 (53-218)||(55619009-55619173)
chr4 (53-218)||(55626313-55626477)
chr4 (53-199)||(54630369-54630515)
chr4 (53-209)||(55637265-55637421)
chr4 (54-186)||(55663621-55663753)
chr4 (95-206)||(50189997-50190108)
chr4 (466-497)||(49211849-49211880)
chr4 (460-494)||(55157627-55157661)
chr4 (465-494)||(3673427-3673456)
chr4 (466-494)||(8179912-8179940)
chr4 (466-494)||(24972272-24972300)
chr4 (466-494)||(48007294-48007322)
[»] chr2 (2 HSPs)
chr2 (53-235)||(13403672-13403854)
chr2 (466-494)||(18176881-18176909)
[»] chr1 (9 HSPs)
chr1 (99-224)||(37308569-37308694)
chr1 (466-494)||(10544172-10544200)
chr1 (466-494)||(17414743-17414771)
chr1 (466-494)||(17415358-17415386)
chr1 (466-494)||(18459589-18459617)
chr1 (466-494)||(18459751-18459779)
chr1 (466-494)||(33024673-33024701)
chr1 (466-494)||(49915876-49915904)
chr1 (466-494)||(52053867-52053895)
[»] chr7 (5 HSPs)
chr7 (466-497)||(4125478-4125509)
chr7 (466-497)||(24507866-24507897)
chr7 (99-184)||(46153223-46153308)
chr7 (466-494)||(4125745-4125773)
chr7 (466-494)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (466-497)||(7725536-7725567)
chr5 (466-494)||(8383971-8383999)
chr5 (466-494)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (466-496)||(2109-2139)
[»] chr6 (1 HSPs)
chr6 (466-494)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (466-494)||(22200607-22200635)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 35 - 247
Target Start/End: Original strand, 9891545 - 9891757
Alignment:
Q  35 gaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaac 134  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  9891545 gaaaaaccccggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaacttgcagagtcatgacaac 9891644  T
Q  135 tgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggtttta 234  Q
    | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  9891645 tatgaaatttatgggaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgccatctccaggcaatggttctcaacctggtttta 9891744  T
Q  235 actttagaagcag 247  Q
    |||||||| ||||    
T  9891745 actttagaggcag 9891757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 9891792 - 9891921
Alignment:
Q  243 agcagaatgtgaccattgttgcaaggaaccaaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttat 342  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  9891792 agcagaatgtgaccattgttgcaaggaacg---------tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagtttttat 9891881  T
Q  343 tggtaactagtgtgtaagatgggcattctcgtgcctgtct 382  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9891882 tggtaactagtgtgtaagatggccattctcgtgcctgtct 9891921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 467
Target Start/End: Complemental strand, 9892040 - 9891982
Alignment:
Q  409 ttttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaatt 467  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  9892040 ttttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaatt 9891982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 17220198 - 17220280
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaact 135  Q
    |||||||||||||| ||||||||  |||||||| || || | |||||||||||||||||| ||| |||||| |||||||||||    
T  17220198 gggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattgataacatgcagaatcatgacaact 17220280  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 8051935 - 8051963
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  8051935 ttatacaatgaatattttatattctaata 8051963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 3671249 - 3671048
Alignment:
Q  24 ggaggagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcaga 123  Q
    |||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  3671249 ggagaagcggagaaaaaccccggttacacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaaagattggaaacttgcaga 3671150  T
Q  124 gtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctca 223  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671149 gtcatgacaactatgaaatttatgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctca 3671050  T
Q  224 ac 225  Q
    ||    
T  3671049 ac 3671048  T

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Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 272 - 502
Target Start/End: Complemental strand, 3670982 - 3670750
Alignment:
Q  272 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaagatgggcattct 371  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattgacaactagtgtgtaagatgggcattct 3670883  T
Q  372 cgtgcctg--tctttgttttcnnnnnnnaataaaatacattttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaattat 469  Q
    ||||||||  | ||| ||||        |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||    
T  3670882 cgtgcctgttttttttttttttttttttaataaaatacattttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaattat 3670783  T
Q  470 acaatgaatattttatattctaatagttaaatt 502  Q
     ||||| ||||||||||||||||||||||||||    
T  3670782 gcaatggatattttatattctaatagttaaatt 3670750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 52983048 - 52982885
Alignment:
Q  55 gagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggc 154  Q
    |||||||||| | |||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||    
T  52983048 gagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgc 52982949  T
Q  155 tgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 218  Q
    ||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  52982948 tgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt 52982885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 54860949 - 54860810
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||    
T  54860949 gggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacatgcagaatcatgacaactatgaaatttatgagaag 54860850  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaag 192  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  54860849 gctgttaaaattcttgagacatattggttggaagatgaag 54860810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 55657523 - 55657369
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||||    
T  55657523 gggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaacttgcagagtcatgacaacaatgaaatttatgagaag 55657424  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctc 207  Q
    ||||| |||||||||||||||||||||||||||||||  | |||||| |||||||    
T  55657423 gctgttaaaattcttgagacatattggttggaagatgttgatgagacactacctc 55657369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 55619173 - 55619009
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55619173 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55619075  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 218  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55619074 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55619009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 55626477 - 55626313
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||||||||||||||||||   ||||||| |||||||    
T  55626477 gggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaacttgcagagtcatgacaacaaagaaatttatgagaag 55626379  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 218  Q
    ||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55626378 gctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55626313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 54630369 - 54630515
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||| | |||||||| |||||||||||| |    ||||||||||||||||||||||||| | ||||||||  || | ||||||| |||||||    
T  54630369 gggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaacttggatagtcatgaagacagagaaatttatgagaag 54630468  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagac 199  Q
    ||||  |||||||| |||| |||||||||||||||||||| ||||||    
T  54630469 gctgctaaaattctcgagagatattggttggaagatgaagatgagac 54630515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 55637265 - 55637421
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||||| ||||| || |||||||   ||||| |  || | || | |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  55637265 gggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaacttgcagagtcatgacaacaatgaaattcgtgagaag 55637364  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctcca 209  Q
    ||||| ||||||||||| |||||||||||  |||||||||  |||||  ||||||||    
T  55637365 gctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacctcca 55637421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 55663753 - 55663621
Alignment:
Q  54 ggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaagg 153  Q
    ||||||||||||| |||||||| ||||||||| || |  | |||||||||||||||||||||||||||||||||  || ||  |||||||| ||||||||    
T  55663753 ggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaacttgcagagtcacaaccacattgaaatttatgagaagg 55663654  T
Q  154 ctgtcaaaattcttgagacatattggttggaag 186  Q
    |||| | |||  | |||||||||||||||||||    
T  55663653 ctgttagaatcgtcgagacatattggttggaag 55663621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 50190108 - 50189997
Alignment:
Q  95 gggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggt 194  Q
    |||||| || ||||| |||||| |||| |||||||| |||   ||||| | |||||||||||| ||||||||||| |||||||||| | | ||||||| |    
T  50190108 gggatttgacaagatagaaaacctgcaaagtcatgataaccaagaaatatatgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagat 50190009  T
Q  195 gagacgctacct 206  Q
    |||| |||||||    
T  50190008 gagatgctacct 50189997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 497
Target Start/End: Original strand, 49211849 - 49211880
Alignment:
Q  466 ttatacaatgaatattttatattctaatagtt 497  Q
    ||||||||||||||||||||||||||||||||    
T  49211849 ttatacaatgaatattttatattctaatagtt 49211880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 494
Target Start/End: Complemental strand, 55157661 - 55157627
Alignment:
Q  460 aacaaattatacaatgaatattttatattctaata 494  Q
    ||||| |||||||||||||||||||||||||||||    
T  55157661 aacaatttatacaatgaatattttatattctaata 55157627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Original strand, 3673427 - 3673456
Alignment:
Q  465 attatacaatgaatattttatattctaata 494  Q
    ||||||||||||||||||||||||||||||    
T  3673427 attatacaatgaatattttatattctaata 3673456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 8179912 - 8179940
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  8179912 ttatacaatgaatattttatattctaata 8179940  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 24972272 - 24972300
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  24972272 ttatacaatgaatattttatattctaata 24972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 48007294 - 48007322
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  48007294 ttatacaatgaatattttatattctaata 48007322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 13403672 - 13403854
Alignment:
Q  53 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 152  Q
    |||||||||||||| |||||||| ||||||||| || |||| |||||||||||||||||| ||| |||||||||||||||||  ||||||||  ||||||    
T  13403672 gggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacctgcagagtcatgacaacaatgaaatttacgagaag 13403771  T
Q  153 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttctcaacctggttttaa 235  Q
    ||||| |||||||| |||||||||||||||||||||||||  ||||| ||||| |||||| ||||||||||||||||||||||    
T  13403772 gctgttaaaattctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggttctcaacctggttttaa 13403854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 18176881 - 18176909
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  18176881 ttatacaatgaatattttatattctaata 18176909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 37308694 - 37308569
Alignment:
Q  99 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgaga 198  Q
    ||||| || ||||| ||| | |||||||||||||||   || |||| ||| |||||||| || |||||||||||||| |||||||| || |||| |||||    
T  37308694 ttggagaaaattgagaacctccagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttgagacatactggttggaggaagaagatgaga 37308595  T
Q  199 cgctacctccaggcaatggttctcaa 224  Q
    |  | ||||||||| ||| |||||||    
T  37308594 ccatgcctccaggcgatgcttctcaa 37308569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 10544172 - 10544200
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  10544172 ttatacaatgaatattttatattctaata 10544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 17414771 - 17414743
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  17414771 ttatacaatgaatattttatattctaata 17414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 17415358 - 17415386
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  17415358 ttatacaatgaatattttatattctaata 17415386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 18459589 - 18459617
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  18459589 ttatacaatgaatattttatattctaata 18459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 18459751 - 18459779
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  18459751 ttatacaatgaatattttatattctaata 18459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 33024701 - 33024673
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  33024701 ttatacaatgaatattttatattctaata 33024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 49915904 - 49915876
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  49915904 ttatacaatgaatattttatattctaata 49915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 52053867 - 52053895
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  52053867 ttatacaatgaatattttatattctaata 52053895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 497
Target Start/End: Complemental strand, 4125509 - 4125478
Alignment:
Q  466 ttatacaatgaatattttatattctaatagtt 497  Q
    ||||||||||||||||||||||||||||||||    
T  4125509 ttatacaatgaatattttatattctaatagtt 4125478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 497
Target Start/End: Original strand, 24507866 - 24507897
Alignment:
Q  466 ttatacaatgaatattttatattctaatagtt 497  Q
    ||||||||||||||||||||||||||||||||    
T  24507866 ttatacaatgaatattttatattctaatagtt 24507897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 46153308 - 46153223
Alignment:
Q  99 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttgga 184  Q
    ||||| || ||||| ||| | |||||||||||||||  ||| |||| ||| |||||||| || ||||| |||||||| ||||||||    
T  46153308 ttggagaaaattgagaacctccagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttgga 46153223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 4125745 - 4125773
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  4125745 ttatacaatgaatattttatattctaata 4125773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 13298805 - 13298777
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  13298805 ttatacaatgaatattttatattctaata 13298777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 497
Target Start/End: Complemental strand, 7725567 - 7725536
Alignment:
Q  466 ttatacaatgaatattttatattctaatagtt 497  Q
    ||||||||||||||||||||||||||||||||    
T  7725567 ttatacaatgaatattttatattctaatagtt 7725536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 8383999 - 8383971
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  8383999 ttatacaatgaatattttatattctaata 8383971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 38378248 - 38378220
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  38378248 ttatacaatgaatattttatattctaata 38378220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 496
Target Start/End: Original strand, 2109 - 2139
Alignment:
Q  466 ttatacaatgaatattttatattctaatagt 496  Q
    |||||||||||||||||||||||||||||||    
T  2109 ttatacaatgaatattttatattctaatagt 2139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 17945301 - 17945329
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  17945301 ttatacaatgaatattttatattctaata 17945329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 22200635 - 22200607
Alignment:
Q  466 ttatacaatgaatattttatattctaata 494  Q
    |||||||||||||||||||||||||||||    
T  22200635 ttatacaatgaatattttatattctaata 22200607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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