View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_low_43 (Length: 247)

Name: NF3128_low_43
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_low_43
NF3128_low_43
[»] chr4 (19 HSPs)
chr4 (1-240)||(3671263-3671502)
chr4 (93-227)||(55636898-55637032)
chr4 (93-231)||(52983286-52983424)
chr4 (94-227)||(54861185-54861318)
chr4 (1-92)||(55619216-55619307)
chr4 (1-92)||(55626520-55626611)
chr4 (1-92)||(55657566-55657657)
chr4 (1-78)||(52983093-52983170)
chr4 (94-227)||(54629891-54630024)
chr4 (93-227)||(55663993-55664127)
chr4 (1-86)||(54860992-54861077)
chr4 (1-92)||(54630127-54630218)
chr4 (1-84)||(55663797-55663880)
chr4 (93-227)||(55619406-55619540)
chr4 (93-227)||(55626710-55626844)
chr4 (93-227)||(55657756-55657890)
chr4 (1-92)||(55637131-55637222)
chr4 (177-227)||(51316255-51316305)
chr4 (138-227)||(50190412-50190501)
[»] chr8 (2 HSPs)
chr8 (94-227)||(9891185-9891318)
chr8 (3-95)||(9891426-9891518)
[»] chr2 (2 HSPs)
chr2 (93-226)||(13403306-13403439)
chr2 (1-92)||(13403538-13403629)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3671263 - 3671502
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaaatactcga 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671263 ttctcaagacattgcaaacagacagtaacaatttttggatcagagcaaacgagcaaatcacacagaggcttaatgcaaccctggctcgccaaatactcga 3671362  T
Q  101 tttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671363 tttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggc 3671462  T
Q  201 aatcagaccagcttcaataacagcctgtatctgctctctg 240  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  3671463 aatcagaccagcttcaataacagcctgtatctactctctg 3671502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 55637032 - 55636898
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||| |||  | |||||||||| ||||||||||||||||||||     
T  55637032 atacttgatttgctcatgggtaccaccagatgtaacattaaagagtgcccatgcagcttcttttgcaatgtcaaactcggcattttgaagaagattgact 55636933  T
Q  193 agaggggcaatcagaccagcttcaataacagcctg 227  Q
    || ||||||||||||| ||||||||||||||||||    
T  55636932 aggggggcaatcagactagcttcaataacagcctg 55636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 52983286 - 52983424
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| |||||||||| ||||||  | | | ||||||||||||||||||||||| ||||| |||  | |||||||||| |||| |||||||||||||||     
T  52983286 atacttgatttgctcaggggtaccactaaacgtagcattagagagtgcccatgcagcttcttttttaatgtcaaactcggcatattgaagaagattgact 52983385  T
Q  193 agaggggcaatcagaccagcttcaataacagcctgtatc 231  Q
    || || |||||||||||||||||||||||||||||||||    
T  52983386 aggggagcaatcagaccagcttcaataacagcctgtatc 52983424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 54861185 - 54861318
Alignment:
Q  94 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 193  Q
    |||| ||||||||| |||||||  || ||||||||||||| |||||||||||| ||||| |||  | |||||||||| |||||||||||||||||||| |    
T  54861185 tacttgatttgctcgtgggtaccacctgatgtagcattagtgagtgcccatgcagcttcttttttaatgtcaaactcagcattttgaagaagattgacta 54861284  T
Q  194 gaggggcaatcagaccagcttcaataacagcctg 227  Q
    | || ||||||| |||||||||||| ||||||||    
T  54861285 ggggagcaatcaaaccagcttcaatgacagcctg 54861318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 55619216 - 55619307
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 92  Q
    ||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55619216 ttctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55619307  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 55626520 - 55626611
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 92  Q
    ||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55626520 ttctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55626611  T

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Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 55657566 - 55657657
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 92  Q
    ||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55657566 ttctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55657657  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 52983093 - 52983170
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaa 78  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52983093 ttctcaagacattctaaacagacaataataatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaa 52983170  T

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Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 54630024 - 54629891
Alignment:
Q  94 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 193  Q
    |||| ||| ||||| |||||||  ||||||||| |||||| |||||||  |||  ||||||||  | |||||||||| |||||||||||||||||||| |    
T  54630024 tacttgatatgctcgtgggtaccaccagatgtaacattagtgagtgcctgtgcaacttcctttgtaatgtcaaactctgcattttgaagaagattgacta 54629925  T
Q  194 gaggggcaatcagaccagcttcaataacagcctg 227  Q
    | || |||||||||||||||||||||||||||||    
T  54629924 ggggagcaatcagaccagcttcaataacagcctg 54629891  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 55663993 - 55664127
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| ||||||||||||||||| |||||||||||||||| | | ||||||||| ||||| |||  |   ||||| || ||||||||||||||||| ||     
T  55663993 atacttgatttgctcatgggtaccgccagatgtagcattaaataatgcccatgcagcttctttttgaacttcaaaatcggcattttgaagaagatttact 55664092  T
Q  193 agaggggcaatcagaccagcttcaataacagcctg 227  Q
    || || ||||| |||||||||||||||||||||||    
T  55664093 aggggagcaattagaccagcttcaataacagcctg 55664127  T

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Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 54860992 - 54861077
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggct 86  Q
    |||||||||| || || |||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  54860992 ttctcaagaccttctagacagacagtaacaattcttggatcagggcaaaccatcaaatcacacagaggcttaatgcaaccctggct 54861077  T

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Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 54630218 - 54630127
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 92  Q
    |||||||||| || || ||| |||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  54630218 ttctcaagaccttctagacaaacagtaactattcttggatcagggcaaactagcaaatcacacagaggcttaatgcaaccctggctcaccaa 54630127  T

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Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 55663797 - 55663880
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctgg 84  Q
    |||||||||| || ||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  55663797 ttctcaagaccttctaagcagacagcaacaattgttggatcagggcaaacaagcaaatcacacagaggtttaatgcaaccctgg 55663880  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 55619406 - 55619540
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55619406 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55619505  T
Q  193 agaggggcaatcagaccagcttcaataacagcctg 227  Q
    || || ||||||||||||||||  |||||||||||    
T  55619506 aggggagcaatcagaccagctttgataacagcctg 55619540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 55626710 - 55626844
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||| ||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55626710 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcacatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55626809  T
Q  193 agaggggcaatcagaccagcttcaataacagcctg 227  Q
    || || ||||||||||||||||| |||||||||||    
T  55626810 aggggagcaatcagaccagcttcgataacagcctg 55626844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 55657756 - 55657890
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55657756 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55657855  T
Q  193 agaggggcaatcagaccagcttcaataacagcctg 227  Q
    || || ||||||||||||||||  |||||||||||    
T  55657856 aggggagcaatcagaccagctttgataacagcctg 55657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 55637222 - 55637131
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 92  Q
    |||||||||| || || ||| |||||||||||| ||||||||  |  | ||||||||||||||||||||||||||||||| |||||| ||||    
T  55637222 ttctcaagaccttctagacaaacagtaacaattcttggatcatggatagcaagcaaatcacacagaggcttaatgcaaccttggctctccaa 55637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 51316305 - 51316255
Alignment:
Q  177 ttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 227  Q
    ||||||||||| |||||| || ||||| |||||||||||||||||||||||    
T  51316305 ttgaagaagatcgaccaggggagcaatgagaccagcttcaataacagcctg 51316255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 50190412 - 50190501
Alignment:
Q  138 tgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 227  Q
    ||||||||| ||||| |||  | |||||||||| ||||||||||||||  |||| || || ||||| ||||| || ||||||||||||||    
T  50190412 tgcccatgcagcttcttttttaatgtcaaactctgcattttgaagaagtctgacaagtggagcaataagaccggcatcaataacagcctg 50190501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 9891318 - 9891185
Alignment:
Q  94 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891318 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 9891219  T
Q  194 gaggggcaatcagaccagcttcaataacagcctg 227  Q
    ||||||||||||||||||||||||||||||||||    
T  9891218 gaggggcaatcagaccagcttcaataacagcctg 9891185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 9891518 - 9891426
Alignment:
Q  3 ctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaaata 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891518 ctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaaata 9891426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 93 - 226
Target Start/End: Complemental strand, 13403439 - 13403306
Alignment:
Q  93 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 192  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||  | ||||||| || |||||||||||||||||||||    
T  13403439 atacttgatttgctcatgggtaccgccagatgtagcattggagagtgcccatgcagcttcttttttaatgtcaaattcggcattttgaagaagattgacc 13403340  T
Q  193 agaggggcaatcagaccagcttcaataacagcct 226  Q
    ||||| |||||||| || ||||||||||||||||    
T  13403339 agaggagcaatcagtccggcttcaataacagcct 13403306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 13403629 - 13403538
Alignment:
Q  1 ttctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 92  Q
    |||||||||| || ||||||||| ||||||||| ||||||| | ||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  13403629 ttctcaagaccttctaaacagacggtaacaattcttggatcggggcaaacaagaagatcacacagaggcttaatgcaaccctggctcaccaa 13403538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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