View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_46 (Length: 239)
Name: NF3128_low_46
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_46 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 845 - 1061
Alignment:
| Q |
2 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctctactgat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
845 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaaccgaaaatctctactgat |
944 |
T |
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| Q |
102 |
gatggctttggtttttgcgatttttctttactacctagctttggtgcagcttcacatcaatagtttccttccattcatgatggtaattcttttacttgga |
201 |
Q |
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| T |
945 |
---ggctttggtttttgccatttttctttactacctagctttggtgcagcttcacatcaatagtttcctcccattcatgatggtaattcttttacttgga |
1041 |
T |
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| Q |
202 |
agtgtcatttcagttttagc |
221 |
Q |
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||||| ||||| ||||||| |
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| T |
1042 |
agtgttgtttcaattttagc |
1061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 6242619 - 6242853
Alignment:
| Q |
2 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctctactgat |
101 |
Q |
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| T |
6242619 |
tgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctctactgat |
6242718 |
T |
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| Q |
102 |
gatggctttggtttttgcgatttttctttactacctagctttggtg---------------cagcttcacatcaatagtttccttccattcatgatggta |
186 |
Q |
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| T |
6242719 |
gatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatggta |
6242818 |
T |
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| Q |
187 |
attcttttacttggaagtgtcatttcagttttagc |
221 |
Q |
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| T |
6242819 |
attcttttacttggaagtgttatttcaattttagc |
6242853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 6219620 - 6219690
Alignment:
| Q |
152 |
ttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgtcatttcagttttagct |
222 |
Q |
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| T |
6219620 |
ttcacatcaagagcttccttccattcatgatggttattgttttacttggaagtgttgtttcagttctagct |
6219690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 6346494 - 6346420
Alignment:
| Q |
148 |
cagcttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgtcatttcagttttagct |
222 |
Q |
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| T |
6346494 |
cagcttcacatcaagaacttccttccattcatgatggttattgttttacttggaagtgttgtttcagttctagct |
6346420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 6326076 - 6325984
Alignment:
| Q |
2 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctc |
94 |
Q |
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| T |
6326076 |
tgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaatgaacacaagtaagggaaagtctc |
6325984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 6333553 - 6333461
Alignment:
| Q |
2 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctc |
94 |
Q |
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| T |
6333553 |
tgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaatgaacacaagtaagggaaagtctc |
6333461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 6333373 - 6333303
Alignment:
| Q |
152 |
ttcacatcaatagtttccttccattcatgatggtaattcttttacttggaagtgtcatttcagttttagct |
222 |
Q |
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| T |
6333373 |
ttcacatcaagagtttctttccttccaagatgatcattcttttacttggaagtgttgtttcagttttagct |
6333303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 6346655 - 6346541
Alignment:
| Q |
2 |
tgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgcagcaatgaatacaagcaacggaaaatctctactgat |
101 |
Q |
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|||||||||||||| || |||| |||||||||| ||| |||||| ||||| | ||||||||| ||| ||||||||| | || |||||| | ||| | |
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| T |
6346655 |
tgaatgaagttggaaaactattaagccaattttttgagctattgttcgcaataattgggtttgcaacaacgaatacaagtatcgaaaaatcaccacttct |
6346556 |
T |
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| Q |
102 |
gatggctttggtttt |
116 |
Q |
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| T |
6346555 |
gatggctttggtttt |
6346541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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