View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_low_5 (Length: 516)

Name: NF3128_low_5
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_low_5
NF3128_low_5
[»] chr1 (5 HSPs)
chr1 (52-498)||(51547639-51548086)
chr1 (1-43)||(26144256-26144298)
chr1 (1-44)||(32982180-32982223)
chr1 (1-45)||(3828983-3829027)
chr1 (1-45)||(35907551-35907595)
[»] chr4 (17 HSPs)
chr4 (253-498)||(47763659-47763898)
chr4 (55-169)||(47763430-47763545)
chr4 (1-45)||(30216866-30216910)
chr4 (2-45)||(6690360-6690403)
chr4 (1-43)||(13012189-13012231)
chr4 (1-43)||(20129311-20129353)
chr4 (1-43)||(47500774-47500816)
chr4 (1-42)||(43143708-43143749)
chr4 (2-41)||(3293021-3293060)
chr4 (1-44)||(36382469-36382512)
chr4 (3-45)||(7769327-7769369)
chr4 (1-43)||(26439403-26439445)
chr4 (1-43)||(34407408-34407450)
chr4 (1-43)||(43355905-43355947)
chr4 (7-45)||(49908782-49908820)
chr4 (1-45)||(10353008-10353052)
chr4 (1-45)||(50205201-50205245)
[»] chr7 (10 HSPs)
chr7 (1-45)||(33685563-33685607)
chr7 (1-45)||(8867855-8867899)
chr7 (1-45)||(34389180-34389224)
chr7 (1-44)||(5555487-5555530)
chr7 (1-44)||(8394125-8394168)
chr7 (1-45)||(37002268-37002312)
chr7 (1-44)||(36630816-36630859)
chr7 (1-43)||(14777231-14777273)
chr7 (4-37)||(43184595-43184628)
chr7 (1-41)||(3114220-3114260)
[»] chr2 (8 HSPs)
chr2 (1-45)||(44084727-44084771)
chr2 (1-44)||(42439986-42440029)
chr2 (2-45)||(45418582-45418625)
chr2 (1-43)||(6403928-6403970)
chr2 (1-45)||(8147350-8147394)
chr2 (1-41)||(41251758-41251798)
chr2 (1-44)||(32127265-32127308)
chr2 (5-45)||(26237956-26237996)
[»] chr5 (10 HSPs)
chr5 (1-44)||(13817977-13818020)
chr5 (4-45)||(31680366-31680407)
chr5 (1-45)||(17332675-17332719)
chr5 (3-42)||(1776502-1776541)
chr5 (1-44)||(3155755-3155798)
chr5 (1-43)||(26283442-26283484)
chr5 (1-45)||(12278984-12279028)
chr5 (1-45)||(31501840-31501884)
chr5 (1-45)||(37254640-37254684)
chr5 (4-44)||(39434696-39434736)
[»] chr3 (10 HSPs)
chr3 (1-45)||(33040952-33040996)
chr3 (2-45)||(45182980-45183023)
chr3 (1-45)||(6503693-6503737)
chr3 (2-45)||(6931019-6931062)
chr3 (1-44)||(22922157-22922200)
chr3 (1-40)||(27935182-27935221)
chr3 (1-44)||(34084246-34084289)
chr3 (1-43)||(22968568-22968610)
chr3 (1-43)||(39771791-39771833)
chr3 (1-45)||(11018336-11018380)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-43)||(480581-480623)
[»] chr8 (7 HSPs)
chr8 (1-43)||(39914516-39914558)
chr8 (1-45)||(4404007-4404051)
chr8 (1-45)||(16788149-16788193)
chr8 (1-45)||(23402107-23402151)
chr8 (1-45)||(36408550-36408594)
chr8 (1-44)||(34136949-34136992)
chr8 (4-45)||(2729323-2729364)
[»] chr6 (5 HSPs)
chr6 (1-43)||(398618-398660)
chr6 (1-44)||(18339106-18339149)
chr6 (2-45)||(28996729-28996772)
chr6 (8-45)||(13647016-13647053)
chr6 (3-44)||(13837821-13837862)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-44)||(5230-5273)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-43)||(523-565)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-45)||(31479-31523)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 52 - 498
Target Start/End: Original strand, 51547639 - 51548086
Alignment:
Q  52 atgaaaaatataccatcagatcttattaatggctaagattttttagatataaaaatgagaacatctacatattccggcacacaatctttaaccccactac 151  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51547639 atgaaaaatataccattaaatcttattaatggctaagattttttagatataaaaatgagaacatctacatattccggcacacaatctttaaccccactac 51547738  T
Q  152 caacagttaggttttcctaagcattttactatgattcatcaattaaattttagtataaccccnnnnnnnnngttgcagaaagaagatggtccgtgagcgg 251  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||         | ||||||||||||||||| |||||||||    
T  51547739 caacaattaggttttcctaagcattttactatgattcatcaattaaatgttagtataaccccaaaaaaaaaggtgcagaaagaagatggtacgtgagcgg 51547838  T
Q  252 gaacaaacaagacaaaagaaattgattgccgattaattcaatttggttcatattcattgactatcatcagtcatcacgacagcaaaaaagcatttcttcc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  51547839 gaacaaacaagacaaaagaaattgattgccgattaattcaatttggttcatatgcattgactatcatcagtcatcacgacagcaaaaaagcatttcatcc 51547938  T
Q  352 atgccaggtcattgaagcatgagcacaatatcttccaatccttctattcttcatca-tcatgaatatgaacaaaatgaacacgcttcaatgacctttgat 450  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51547939 atgccaggtcattgaagcatgagcacaacatcttccaatccttctattcttcatcattcatgaatatgaacaaaatgaacacgcttcaatgacctttgat 51548038  T
Q  451 taaatcaaattaaaatacgagatatgaaatattcatgaatgaccaaaa 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51548039 taaatcaaattaaaatacgagatatgaaatattcatgaatgaccaaaa 51548086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26144298 - 26144256
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  26144298 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32982180 - 32982223
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  32982180 tgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3829027 - 3828983
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||    
T  3829027 tgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccg 3828983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35907595 - 35907551
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  35907595 tgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccg 35907551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 253 - 498
Target Start/End: Original strand, 47763659 - 47763898
Alignment:
Q  253 aacaaacaagacaaaagaaattgattgccgattaattcaatttggttcatattcattgactatcatcagtcatcacgacagcaaaaaagcatttcttcca 352  Q
    |||| ||||||||||||| |||||||||   | ||||  |||||||||||||||| | |||||||||        || ||||||| ||||||| | ||||    
T  47763659 aacagacaagacaaaagacattgattgctagtcaatttgatttggttcatattcactcactatcatcg-------cggcagcaaagaagcattccatcca 47763751  T
Q  353 tgccaggtcattgaagcatgagcacaatatcttccaatccttctattcttcatcat-catgaatatgaacaaaatgaacacgcttcaatgacctttgatt 451  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||||| | ||||| |||||| ||||||||||||| |    |||||||||||||||||    
T  47763752 tgccaggtcattgaagtatgagtacaacgtcttccaatccttctattcctaatcattcatgaacatgaacaaaatgagcgtatttcaatgacctttgatt 47763851  T
Q  452 aaatcaaattaaaatacgagatatgaaatattcatgaatgaccaaaa 498  Q
    || || |||| ||||| |||||||||||||||||||||||| |||||    
T  47763852 aagtcgaattgaaatatgagatatgaaatattcatgaatgatcaaaa 47763898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 47763430 - 47763545
Alignment:
Q  55 aaaaatataccatcagatcttattaatggctaagattttttagatataaaaatgagaacatctacatattccggcacacaatctttaa-ccccactacca 153  Q
    ||||||||| ||||||||||||| ||||| ||| |||||| | ||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||  ||    
T  47763430 aaaaatatatcatcagatcttatcaatggttaatatttttcatatataaaaatgagaacacctacacattcctgcacacaatctttaacccccactgtca 47763529  T
Q  154 acagttaggttttcct 169  Q
    | ||||||||||||||    
T  47763530 atagttaggttttcct 47763545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30216866 - 30216910
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  30216866 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 30216910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 6690360 - 6690403
Alignment:
Q  2 gcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  6690360 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 6690403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13012231 - 13012189
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  13012231 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20129353 - 20129311
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  20129353 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 47500816 - 47500774
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  47500816 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43143708 - 43143749
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcg 42  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  43143708 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 43143749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 3293021 - 3293060
Alignment:
Q  2 gcaaaaattatcgatcgagcccgagcgactgcccggggtc 41  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  3293021 gcaaaaattatcgatcgagcccgggcgaccgcccggggtc 3293060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36382469 - 36382512
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||    
T  36382469 tgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 7769369 - 7769327
Alignment:
Q  3 caaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccg 7769327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26439403 - 26439445
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||    
T  26439403 tgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34407408 - 34407450
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||    
T  34407408 tgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43355947 - 43355905
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||    
T  43355947 tgcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 49908782 - 49908820
Alignment:
Q  7 aattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccg 49908820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10353008 - 10353052
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||| ||||||| ||||| ||| ||||||||||    
T  10353008 tgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccg 10353052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50205201 - 50205245
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||| || ||||| ||||||| ||||||    
T  50205201 tgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccg 50205245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33685607 - 33685563
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  33685607 tgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccg 33685563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8867855 - 8867899
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  8867855 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 8867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34389180 - 34389224
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  34389180 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 34389224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5555530 - 5555487
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  5555530 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 5555487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8394168 - 8394125
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  8394168 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37002268 - 37002312
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||    
T  37002268 tgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccg 37002312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36630859 - 36630816
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||||||| ||||| | |||||||||||    
T  36630859 tgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14777231 - 14777273
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||    
T  14777231 tgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 43184595 - 43184628
Alignment:
Q  4 aaaaattatcgatcgagcccgagcgactgcccgg 37  Q
    ||||||||||||||||||||||||||| ||||||    
T  43184595 aaaaattatcgatcgagcccgagcgaccgcccgg 43184628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3114220 - 3114260
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtc 41  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  3114220 tgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44084727 - 44084771
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  44084727 tgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccg 44084771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42440029 - 42439986
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  42440029 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 42439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 45418625 - 45418582
Alignment:
Q  2 gcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  45418625 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 45418582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6403928 - 6403970
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  6403928 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8147394 - 8147350
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  8147394 tgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccg 8147350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41251758 - 41251798
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtc 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  41251758 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32127265 - 32127308
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||    
T  32127265 tgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 26237996 - 26237956
Alignment:
Q  5 aaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||| ||||||||||||||| ||||| ||||||||||||||    
T  26237996 aaaaatatcgatcgagcccgggcgaccgcccggggtcgccg 26237956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13818020 - 13817977
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  13818020 tgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcc 13817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 31680407 - 31680366
Alignment:
Q  4 aaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  31680407 aaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 31680366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17332675 - 17332719
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||    
T  17332675 tgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccg 17332719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 1776502 - 1776541
Alignment:
Q  3 caaaaattatcgatcgagcccgagcgactgcccggggtcg 42  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  1776502 caaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3155755 - 3155798
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||    
T  3155755 tgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26283442 - 26283484
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||    
T  26283442 tgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12278984 - 12279028
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||| ||| ||||| ||||||| ||||||    
T  12278984 tgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccg 12279028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31501840 - 31501884
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| || |  ||||||||||||||    
T  31501840 tgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccg 31501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37254684 - 37254640
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||| | ||||| ||| ||||||||||    
T  37254684 tgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccg 37254640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 39434736 - 39434696
Alignment:
Q  4 aaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    ||||||||||||||||||||| ||||| |||| ||||||||    
T  39434736 aaaaattatcgatcgagcccgggcgaccgcccagggtcgcc 39434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33040996 - 33040952
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||    
T  33040996 tgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccg 33040952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 45183023 - 45182980
Alignment:
Q  2 gcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  45183023 gcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccg 45182980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6503693 - 6503737
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||    
T  6503693 tgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccg 6503737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 6931019 - 6931062
Alignment:
Q  2 gcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||||| ||||| | ||||||||||||    
T  6931019 gcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccg 6931062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22922200 - 22922157
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||    
T  22922200 tgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgcc 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27935221 - 27935182
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggt 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  27935221 tgcaaaaattatcgatcgagcccgggcgactgcccagggt 27935182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34084246 - 34084289
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||    
T  34084246 tgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22968568 - 22968610
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    ||||||||||||||||||||||||  |||| ||||||||||||    
T  22968568 tgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39771833 - 39771791
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||    
T  39771833 tgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11018336 - 11018380
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||| | ||||| |||||| |||||||    
T  11018336 tgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccg 11018380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 480581 - 480623
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  480581 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39914558 - 39914516
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  39914558 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4404051 - 4404007
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||    
T  4404051 tgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccg 4404007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16788149 - 16788193
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||    
T  16788149 tgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccg 16788193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23402151 - 23402107
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  23402151 tgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccg 23402107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36408594 - 36408550
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  36408594 tgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccg 36408550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34136949 - 34136992
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||||||||||||||| ||||| || ||||||||||    
T  34136949 tgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgcc 34136992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 2729323 - 2729364
Alignment:
Q  4 aaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    
T  2729323 aaaaattatcgatcgagcccgggcgtccgcccggggtcgccg 2729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 398660 - 398618
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  398660 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18339149 - 18339106
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||    
T  18339149 tgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 28996772 - 28996729
Alignment:
Q  2 gcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||| || ||||| ||||||||||||||    
T  28996772 gcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccg 28996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 13647053 - 13647016
Alignment:
Q  8 attatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccg 13647016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 13837862 - 13837821
Alignment:
Q  3 caaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  13837862 caaaaattatcgatcgaacccgagcgatcgcccggggtcgcc 13837821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5273 - 5230
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgcc 44  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||    
T  5273 tgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 565 - 523
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgc 43  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||    
T  565 tgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31523 - 31479
Alignment:
Q  1 tgcaaaaattatcgatcgagcccgagcgactgcccggggtcgccg 45  Q
    |||||||||||||||||||||||| ||||| | | ||||||||||    
T  31523 tgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccg 31479  T

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