View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_52 (Length: 209)
Name: NF3128_low_52
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 5733363 - 5733538
Alignment:
| Q |
16 |
gaagatgcaggaccacaatagaagaaaatcaatggaataccaaccnnnnnnnacaagaaggttgtcgtgttattttttggtacccaagcctagtaaagaa |
115 |
Q |
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| T |
5733363 |
gaagatgcaggaccacaatagaagaaaatcaatggaataccaacctttttttacaagaaggttgtcgtgttattttttggtacccaagcctagtaaagaa |
5733462 |
T |
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| Q |
116 |
gtatcgaataagatacccaagtcgaaataatagtgtgatttgaaaactgttagtgagatcgtatccagaataagaact |
193 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5733463 |
gtatcgaataa--tacccaagtcgaaataatagtgtgatttgaaaactgttagtgagatcgtatccagaataagaact |
5733538 |
T |
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