View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3128_low_54 (Length: 203)

Name: NF3128_low_54
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3128_low_54
NF3128_low_54
[»] chr4 (8 HSPs)
chr4 (7-182)||(8979102-8979277)
chr4 (7-181)||(9000333-9000507)
chr4 (6-181)||(8966422-8966597)
chr4 (7-175)||(8954773-8954941)
chr4 (7-171)||(8900745-8900909)
chr4 (15-182)||(9030616-9030783)
chr4 (10-179)||(8914653-8914822)
chr4 (7-167)||(8929572-8929732)
[»] chr5 (2 HSPs)
chr5 (12-182)||(20074209-20074379)
chr5 (7-182)||(9400442-9400617)
[»] scaffold0287 (1 HSPs)
scaffold0287 (16-184)||(15563-15731)
[»] chr7 (2 HSPs)
chr7 (16-92)||(3619978-3620054)
chr7 (16-184)||(3630354-3630522)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 8979277 - 8979102
Alignment:
Q  7 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979277 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcc 8979178  T
Q  107 taatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979177 taatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctga 8979102  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 9000333 - 9000507
Alignment:
Q  7 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcc 106  Q
    ||||||| ||||||||  |||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||| || |    
T  9000333 ggtaggtgcaatcttagcgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctcccaaatttc 9000432  T
Q  107 taatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctg 181  Q
    ||||||| ||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  9000433 taatttcatcttgtactttcctcattactcttgggtttttcattaaggcagtcatagcccaaactgatgtggctg 9000507  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 8966422 - 8966597
Alignment:
Q  6 aggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttc 105  Q
    |||||||| |||||| || |||||||||||||||||||| ||||||||  ||||||||||||||| ||| ||||  || |||||||||| |||||||||     
T  8966422 aggtaggtgcaatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagttt 8966521  T
Q  106 ctaatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctg 181  Q
    |||||||| ||||| |||||  |||||||||||||||||||||| ||||  || ||||||||||||||||||||||    
T  8966522 ctaatttcttcttgtactttcttcattactcttgggttttttatcagggaggttatagcccaaactgatgtggctg 8966597  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 8954941 - 8954773
Alignment:
Q  7 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcc 106  Q
    |||||||  ||||||| ||||||||| |  |  ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||| || |    
T  8954941 ggtaggtgtaatcttagtgtctctttaactatagccttcaaataaggacaattttgaatatcatcttcatataaaaaatcttttttaactcccaaatttc 8954842  T
Q  107 taatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatg 175  Q
    | ||||| ||||  ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  8954841 ttatttcttcttttactttactcattactctagggttttttattagagcagtcatagcccaaactgatg 8954773  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 8900745 - 8900909
Alignment:
Q  7 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaa-ttttgaatatcatcttcatctaaaaaatcttttttacctcccaagttc 105  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||||| ||||| |||||||||||||||| ||| ||||||||| |||   | |||    
T  8900745 ggtaggtacaatctcaatgtctcttttatcactgccttcaagta-ggagaaattttgtatatcatcttcatctataaattcttttttaactcttgaattc 8900843  T
Q  106 ctaatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaact 171  Q
    ||||| || | |||||||||  ||||||||||||| |||||||||| |||||||||||||||||||    
T  8900844 ctaatctcttgttgcactttcttcattactcttggattttttattaaggcagtcatagcccaaact 8900909  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 9030783 - 9030616
Alignment:
Q  15 caatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcc 114  Q
    ||||||||| |||||||| |||||||| |||||||| ||  ||||||||| |||| ||||||||||| ||||||||  |||||||||||| || |||||     
T  9030783 caatcttaacgtctctttaatcactgcattcaaataaggtaaattttgaagatcaccttcatctaaataatcttttgcacctcccaagtttctgatttct 9030684  T
Q  115 tcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctga 182  Q
    ||||| |||||   || ||||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  9030683 tcttgtactttatccaatactcttgggtttttcattagggcggtcatagcccaaactgatgcggctga 9030616  T

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Target: chr4; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 8914653 - 8914822
Alignment:
Q  10 aggtacaatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaa 109  Q
    ||||||||||| ||||||||||||||||||||||| || || |   ||||| | |||||||||||||||| ||| ||||||||| |||   | |||||||    
T  8914653 aggtacaatctcaatgtctcttttatcactgcctttaagtaggacaaatttcgtatatcatcttcatctataaattcttttttaactcttgaattcctaa 8914752  T
Q  110 tttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggc 179  Q
    | || | ||| |||||  ||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  8914753 tctcttgttgtactttcttcattactcttggattttttattaaggcagtcatagcccaaactgctgtggc 8914822  T

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Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 8929572 - 8929732
Alignment:
Q  7 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcc 106  Q
    |||||||||||||| ||||||||||||||||| |||||||||||     ||||||| | ||||||| | |||| |||||| |||||| |||   |   ||    
T  8929572 ggtaggtacaatctcaatgtctcttttatcaccgccttcaaatagacgaaattttgtagatcatctccgtctagaaaatcctttttaactcttgatcccc 8929671  T
Q  107 taatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagccca 167  Q
    |||| || ||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  8929672 taatctcttcttgtactttcttcattactcttgggttttttattagggcagtcatagccca 8929732  T

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Target: chr5 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 20074209 - 20074379
Alignment:
Q  12 gtacaatcttaatgtctcttttatcactgccttcaaatatggag-aattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaat 110  Q
    ||||||||| | |||||||||||||||||||||||| || |||| ||||||| |||||||||||||||| ||| ||||||||| ||    | || |||||    
T  20074209 gtacaatctcagtgtctcttttatcactgccttcaagta-ggagaaattttgtatatcatcttcatctataaattcttttttaacttttgaatttctaat 20074307  T
Q  111 ttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctga 182  Q
     || | ||| |||||  ||||||||||||| ||||||||||  |||||||||||||| |||| |||||||||    
T  20074308 ctcttgttgtactttcttcattactcttggattttttattaatgcagtcatagcccatactgttgtggctga 20074379  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 9400442 - 9400617
Alignment:
Q  7 ggtaggtacaatcttaatgtctcttttatcactgccttcaaatatggagaa-ttttgaatatcatcttcatctaaaaaatcttttttacctcccaagttc 105  Q
    |||||| | ||||| |||||||||||||| ||||||||||| || |||||| ||||| |||||||||||||||||||| ||||||||| |||   |  ||    
T  9400442 ggtaggaataatctcaatgtctcttttatgactgccttcaagta-ggagaaattttgtatatcatcttcatctaaaaagtcttttttaactcttgaactc 9400540  T
Q  106 ctaatttcctcttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctga 182  Q
    ||||| || | ||| |||||  ||||||||   ||||| ||||||||| ||||||| ||||||||| |||| |||||    
T  9400541 ctaatctcttgttgtactttcttcattactgcagggttctttattaggacagtcattgcccaaactaatgtagctga 9400617  T

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Target: scaffold0287 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 15731 - 15563
Alignment:
Q  16 aatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcct 115  Q
    ||||||||||| ||||||||||| ||||| | ||||  |   ||||||||||||||||||||||  || |||||||| || |  | ||| |||||||| |    
T  15731 aatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttctt 15632  T
Q  116 cttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctgaag 184  Q
    ||||  ||||  ||||| ||||||| || || ||||   ||||||| |||||||| |||||||||||||    
T  15631 cttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaag 15563  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 3619978 - 3620054
Alignment:
Q  16 aatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatctttttt 92  Q
    ||||||||||||||||||||||| ||||| ||||||  | | ||||||||||||||||||||||  || ||||||||    
T  3619978 aatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaactctttttt 3620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 3630354 - 3630522
Alignment:
Q  16 aatcttaatgtctcttttatcactgccttcaaatatggagaattttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttcct 115  Q
    ||||||||||| ||||||||||| ||||| | ||||  |   ||||||||||||||||||||||  || |||||||| || |  | ||| |||||||| |    
T  3630354 aatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaactcttttttgccacatatgtttctaatttctt 3630453  T
Q  116 cttgcacttttctcattactcttgggttttttattagggcagtcatagcccaaactgatgtggctgaag 184  Q
    ||||  ||||  ||||| ||||||| || || ||||   ||||||| |||||||| |||||||||||||    
T  3630454 cttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaag 3630522  T

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