View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3128_low_9 (Length: 437)
Name: NF3128_low_9
Description: NF3128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3128_low_9 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 8316901 - 8317327
Alignment:
| Q |
1 |
ttcatctttttatcagctcctcttttctgctcttacatctcattatcttttcaactgcacctccttagaagaattagaattggtactccatgtgttctcc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8316901 |
ttcatctttttatcagctccccttttctgctcttacatctcattatcttttcaactgcacctccttagaagaattagaattggtactccatgtgtcctcc |
8317000 |
T |
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| Q |
101 |
accataaaatttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317001 |
accataaaatttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttga |
8317100 |
T |
|
| Q |
201 |
cccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8317101 |
cccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattgtagaagctcctctacttgaaattgtttc |
8317200 |
T |
|
| Q |
301 |
catagaacaagacattgaattttattatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactct |
400 |
Q |
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| T |
8317201 |
catagaacaagacattgaattttataatgcggcatcccatgacctacatagccaatccatcaaattcaatgctttgcatctcaagcaattcacttactct |
8317300 |
T |
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| Q |
401 |
gggtatggtacagcacaactaattcat |
427 |
Q |
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| T |
8317301 |
gggtatggtacagcacaactaattcat |
8317327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 8359072 - 8358987
Alignment:
| Q |
228 |
ttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttgaaattgtttccatagaacaagac |
313 |
Q |
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| T |
8359072 |
ttgatattaaaaactgcatttggtgtggtagaaaagatcttatcgtacaagctcctcttcttgaaaacatttccatagaacaagac |
8358987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 92 - 314
Target Start/End: Complemental strand, 1967 - 1745
Alignment:
| Q |
92 |
gtgttctccaccataaaatttcccagcatttctgttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcg |
191 |
Q |
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| T |
1967 |
gtgtactctaccataaaatttccctctacctctcttcattttcaacagctaaaatttctcaacttgtatggagtcttttttgacattgatccctctagtg |
1868 |
T |
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| Q |
192 |
actgtttgacccttaatttaccacttcttagaaagtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctctacttga |
291 |
Q |
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| T |
1867 |
actctatgaaccttaatttaccgcttgtaaaaaagtttgagatcagtaactgccattagtcgaatggaaaatatgttattgtacaagcctccctacttga |
1768 |
T |
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| Q |
292 |
aattgtttccatagaacaagaca |
314 |
Q |
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| T |
1767 |
aactgtttccataggacaagaca |
1745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 28111560 - 28111434
Alignment:
| Q |
126 |
ttcattttggacacctaaaactcctcaagttgtatgggatcttttttaagattgatacctctagcgactgtttgacccttaatttaccacttcttagaaa |
225 |
Q |
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| T |
28111560 |
ttcattttcaacagctgaaattcctcaacttgtatggagtcttttttgacattgatccctctagtgactctatgaaccttaatttaccgcttgttaaaaa |
28111461 |
T |
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| Q |
226 |
gtttgatatcaaaaactgcaattggtc |
252 |
Q |
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| T |
28111460 |
gtttgagatcagtaactgccattggtc |
28111434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 7795571 - 7795631
Alignment:
| Q |
225 |
agtttgatatcaaaaactgcaattggtcgggtggaaaagatcttattttagaagctcctct |
285 |
Q |
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| T |
7795571 |
agtttgagatcaagaactgcaattggtcaagtggaaaggatgttattgtagaagcttctct |
7795631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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