View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3129_high_1 (Length: 571)
Name: NF3129_high_1
Description: NF3129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3129_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Original strand, 2264225 - 2264772
Alignment:
| Q |
15 |
attttgagggttgttttgagaattttaatgttaacaaaatttgtctgtaattgcttaaacgtttagaagtgtcaaaataaaatgaaatagtatatcagtc |
114 |
Q |
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| T |
2264225 |
attttgagggttgttttgagaattttaatgttaacaaaatttgtctgtaattgcttaaacgtttagaagtgtcaaaataaaatgaaatagtatatcagtc |
2264324 |
T |
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| Q |
115 |
aaacaatagatatcttttgaatatcttatttctaccggtatgtaacatataaactcgtttgtggtagctaaatatatattatcgagggatcgaataaaat |
214 |
Q |
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| T |
2264325 |
aaacaatagatatcttttgaatatcttatttctaccggtatgtaacagataaactcgtttgtggtagctaaatatatattatcgagggatcgaataaaat |
2264424 |
T |
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| Q |
215 |
tatattttgggttaaccaaagttactccatcgttacacataacttcaccattgcatatgagtcataaaggagcgctcgttgtcgaaactcgtaagtatct |
314 |
Q |
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| T |
2264425 |
tatattttgggttaaccaaagttactccatcgttacacataacttcaccattgcatatgagtcataaaggaacgctcgttgtcgaaactcgtaagtatct |
2264524 |
T |
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| Q |
315 |
ttaataagagatgaatgtaagtattttttatacgttgctcgtaagtatctttagtgagaaataaatgtaaatatattttatactctaaagnnnnnnnnnn |
414 |
Q |
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| T |
2264525 |
ttaataagagatgaatgtaagtattttttatacgttactcgtaagtatctttagtgaaaaataaatgtaaatgtattttatactctaaagtttttttttt |
2264624 |
T |
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| Q |
415 |
gccttgagctgggggcaacaatattctctcacccacaa-nnnnnnngagaaaataaataaaattaataaacacagatatttttcttataattgaatcagg |
513 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2264625 |
gcgttgagctgggggcaacaatattctctcacccacaattttttttgagaaaataaataaaataaataaacacagatatttttcttataattgaatcagg |
2264724 |
T |
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| Q |
514 |
tgcaattaaaatagcaacatattcaaagctgtggccaaacattagtat |
561 |
Q |
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| T |
2264725 |
tgcaattaaaatagcaacatattcaatgctgtggccaaacattagtat |
2264772 |
T |
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