View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3129_high_2 (Length: 380)
Name: NF3129_high_2
Description: NF3129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3129_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 43502819 - 43502467
Alignment:
| Q |
19 |
agagacataaacatagtaataataatcgtaatcgtacaaatgaaaaagacttacattaaccaagtaatggtgttcaaatgtttatttagttaccctctnn |
118 |
Q |
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| T |
43502819 |
agagacctaaacatagtaataataatcgtaatcgtacaaatgaaaaagacttacattaaccaagtaatggtgttcaaatgtttatttagtttccctctaa |
43502720 |
T |
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| Q |
119 |
nnnnnnggtttaattagtttcatttaacgaaaaattatttaagagattctgagcttaatatgtagctgaaatacttctttatcataagttatttatcttt |
218 |
Q |
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| T |
43502719 |
aaaa--ggtttaattagtttcatttaacgacaaatcatttaagagattctgagcttaatatgtagctgaaatacttctttatcataagttatttatctct |
43502622 |
T |
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| Q |
219 |
tagacgagtaaccgattgatagaatcnnnnnnnctaaaaatcgaagggttaacagaaaacaaatacttgcgttgcatgggaaaatgacacgtgttcatcg |
318 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43502621 |
tagacgagtaatcgattgatagaatctttttttctaaaaatcgaagggttaacagaaaacaaatacttgcgttgcatgggaaaatgacacgtgttcatcg |
43502522 |
T |
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| Q |
319 |
gcacgtgctgaattaggttttatttattgtgaaacttttgtggttttttcttttc |
373 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43502521 |
gcacgtgctgacttaggttttatttattgtgaaacttttgtggttttttcttttc |
43502467 |
T |
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