View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3129_high_3 (Length: 325)
Name: NF3129_high_3
Description: NF3129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3129_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 35709266 - 35708974
Alignment:
| Q |
18 |
gattattcatatataccaaactaggtttaaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaatgactcataag |
117 |
Q |
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| T |
35709266 |
gattattcatatataccaaactaggtttaaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaaagactcataag |
35709167 |
T |
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| Q |
118 |
gcattatcccagctccatttctattcttcaaattcttgtttttattccttgagtctataataccttcaatctctttcaatcttctatgaaatctttcaaa |
217 |
Q |
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| T |
35709166 |
gcattatcccagctccatttctattcttcaaattcttgtttttattccttgagtctataataccttcaatctctttcaatctcctatgaaatctttcaaa |
35709067 |
T |
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| Q |
218 |
agctgctttgatagttggattctcaccccacgatggctctattttttgtccaatatactcttcatctgctgaatgctctgataatatgttcat |
310 |
Q |
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| T |
35709066 |
agctgcttttatagttggattctcaccccaagatggctctattttttgtccaatatactcttcatctgctgaatgctctgataatatgttcat |
35708974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 31 - 310
Target Start/End: Complemental strand, 35725156 - 35724877
Alignment:
| Q |
31 |
taccaaactaggtttaaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaatgactcataaggcattatcccagc |
130 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
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| T |
35725156 |
taccacactaggtttaaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaaggactcataaggcacaataccagc |
35725057 |
T |
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| Q |
131 |
tccatttctattcttcaaattcttgtttttattccttgagtctataataccttcaatctctttcaatcttctatgaaatctttcaaaagctgctttgata |
230 |
Q |
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| T |
35725056 |
tccatgtctattcttcatattcctatcttcattccttgagtctataataccttcaatttcattcaatctcctttgtaacttttcaaaagctgcctttata |
35724957 |
T |
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| Q |
231 |
gttggattctcaccccacgatggctctattttttgtccaatatactcttcatctgctgaatgctctgataatatgttcat |
310 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||| || ||||||||| |||| |
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| T |
35724956 |
gttgaattctcaccccaagatggctctattttttgtccaatgtactcttcatcgggtgaatgttccgataatatgctcat |
35724877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 309
Target Start/End: Original strand, 35725585 - 35725849
Alignment:
| Q |
45 |
taaatggatatgctgtatgggactccttttccagtgactccaggccctgaaaatggctttaatgactcataaggcattatcccagctccatttctattct |
144 |
Q |
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||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||| || | | |||||| |||| ||||||||||||||| ||||| | |
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| T |
35725585 |
taaatagatatgctatatggaactccttttccagtgactccaggtcctgaaaatggtttcattagctcatatggcactatcccagctccattcctatttt |
35725684 |
T |
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| Q |
145 |
tcaaattcttgtttttattccttgagtctataataccttcaatctctttcaatcttctatgaaatctttcaaaagctgctttgatagttggattctcacc |
244 |
Q |
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| ||||| | ||| ||| ||||||||||| ||| ||||||| || |||||||| | || ||| |||||||| ||| | || |||| |||||||||| | |
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| T |
35725685 |
tgaaattactatttgcatttcttgagtctattataacttcaatttccttcaatctcccattaaacctttcaaatgctacctttatagctggattctcagc |
35725784 |
T |
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| Q |
245 |
ccacgatggctctattttttgtccaatatactcttcatctgctgaatgctctgataatatgttca |
309 |
Q |
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||| ||||| || || |||||| | ||||||||||||| |||||| | |||||||| ||||| |
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| T |
35725785 |
ccatgatggttcaatgagttgtcccaagtactcttcatctggtgaatgatatgataataagttca |
35725849 |
T |
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