View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3129_low_2 (Length: 417)
Name: NF3129_low_2
Description: NF3129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3129_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 71 - 402
Target Start/End: Complemental strand, 18418434 - 18418104
Alignment:
| Q |
71 |
ctcttttccttctcaaaactctccnnnnnnnncactcttttcaaacatcaaaatgtgcagctcaaaggccaaagtaggcatagaaagcacaaccacagcc |
170 |
Q |
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| T |
18418434 |
ctcttttccttctcaaaactctccaaaaaaa-cactattttcaaacatcaaaatgtgcagctccaaggccaaagtaggcatagaaagcaaaaccacagcc |
18418336 |
T |
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| Q |
171 |
acagctacatcacctgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaat |
270 |
Q |
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| T |
18418335 |
acagctacatcacctgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagtgccaaatcttgaaagaagaaattcaatcaagaaat |
18418236 |
T |
|
| Q |
271 |
tgccaccaaaatcactttctctaccatcatcaccaccacttccaaccaaaacttcatcaacaccaccactttctccaaagctaaagtcaccaagaccacc |
370 |
Q |
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| T |
18418235 |
taccaccaaaatcactttcactaccatcatcaccaccacttccaaccaaaacttcatcaacaccaccactttctccaaagctaaagtcaccaagaccacc |
18418136 |
T |
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| Q |
371 |
agcaacaaagagagtcaatgaaacttatctct |
402 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18418135 |
agcaacaaagagagtcaatgaaacttatctct |
18418104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 26804769 - 26804663
Alignment:
| Q |
185 |
tgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatca |
284 |
Q |
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| T |
26804769 |
tgttgctagaatcaatggaaggccagtacttcaaccaacatgcaaccatgttccaaatcttgaaagaagaaactcaattaagaaatcaacaccaaaatca |
26804670 |
T |
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| Q |
285 |
ctttctc |
291 |
Q |
| |
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| T |
26804669 |
ctttctc |
26804663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 32591282 - 32591176
Alignment:
| Q |
185 |
tgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatca |
284 |
Q |
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|||||| | |||||||||||| || || ||||||||||| || ||| ||| ||||||||||||||||||| ||||| ||||||| |||| |||||| |
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| T |
32591282 |
tgttgctagaatcaatggaaggccagtacttcaaccaacatgcaaccatgtttcaaatcttgaaagaagaaactcaattaagaaatcaacaccgaaatca |
32591183 |
T |
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| Q |
285 |
ctttctc |
291 |
Q |
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||||||| |
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| T |
32591182 |
ctttctc |
32591176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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