View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3129_low_6 (Length: 296)
Name: NF3129_low_6
Description: NF3129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3129_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 35707808 - 35708078
Alignment:
| Q |
12 |
catcatcaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgt |
111 |
Q |
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| T |
35707808 |
catcatcaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgt |
35707907 |
T |
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| Q |
112 |
ttgcaggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35707908 |
ttgcaggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacat |
35708007 |
T |
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| Q |
212 |
ctgagatataccatggaaatcaataaagttgcgcgtgaagtgctcattaatgcaagtggcatccttgaaat |
282 |
Q |
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| T |
35708008 |
ctgagatataccatggaaatcaataaagttgcgcgtgaagtgctcattaatgcaagtggcatccttgaaat |
35708078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 35723768 - 35724038
Alignment:
| Q |
12 |
catcatcaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgt |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723768 |
catcatgaacttataagccattggtgagtaccaattaggttgtatgagatgttatgtcaagcttataactagtactaacttagtaatatgttaattctgt |
35723867 |
T |
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| Q |
112 |
ttgcaggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacat |
211 |
Q |
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| T |
35723868 |
ttgcaggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatacatccaatatttagattattgcatccacat |
35723967 |
T |
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| Q |
212 |
ctgagatataccatggaaatcaataaagttgcgcgtgaagtgctcattaatgcaagtggcatccttgaaat |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
35723968 |
ctgagatataccatggaaatcaataaagttgcgcgtgaagtactcattaatgcaagtgggctccttgaaat |
35724038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 22512825 - 22512703
Alignment:
| Q |
117 |
ggctaagaactcattgtgttgtcgaacctattataattgcaacacacagacaactcagttccatgcatccaatttttagattattgcatccacatctgag |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22512825 |
ggctaaaaactcattgtgttgtcgaacctattataattgccatgcatagacaactcagttccatgcatctaatttttagattattgcatccacatctgag |
22512726 |
T |
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| Q |
217 |
atataccatggaaatcaataaag |
239 |
Q |
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||||||||||| |||||||||| |
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| T |
22512725 |
gtataccatggagatcaataaag |
22512703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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