View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3129_low_7 (Length: 289)
Name: NF3129_low_7
Description: NF3129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3129_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 28290266 - 28290001
Alignment:
| Q |
11 |
aatactagtatacaaacataatacaccaaacatggtgagggtcatac----tagatcaccatgcacgtagcgaagtacaaacatatcatgacctttaagt |
106 |
Q |
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| T |
28290266 |
aatactagtatacaaacataatacaccaaacatggtgagggtcatacatactagatcaccatgcacgtagcgaagtacaaacatatcatgacctttaagt |
28290167 |
T |
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| Q |
107 |
catcaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaatcaaagctgtg |
206 |
Q |
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| T |
28290166 |
caccaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaatt-aatcaaagctgtg |
28290068 |
T |
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| Q |
207 |
agcaaagaatagtttttgaaaaacaaaatttacgaattaaagttatgttttaataccatgttaaaac |
273 |
Q |
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| T |
28290067 |
atcagagaatagtttttgaaaaacaaaatttacgaattaaagtcatgttttaataccatgttaaaac |
28290001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 28281910 - 28281774
Alignment:
| Q |
99 |
ctttaagtcatcaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaatca |
198 |
Q |
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| T |
28281910 |
ctttaagtcaccaatactattgattaaaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaagtta |
28281811 |
T |
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| Q |
199 |
aagctgtgagcaaagaatagtttttgaaaaacaaaat |
235 |
Q |
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| T |
28281810 |
aagttgtggtcagagaatagtttttgaaaaacaaaat |
28281774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 28302949 - 28302889
Alignment:
| Q |
134 |
aaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaa |
195 |
Q |
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| T |
28302949 |
aaaaatgtaaa-tatctaacctgtgagaacagcattcagtaagagaacgccctgaaattaaa |
28302889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 28281991 - 28281950
Alignment:
| Q |
11 |
aatactagtatacaaacataatacaccaaacatggtgagggt |
52 |
Q |
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| T |
28281991 |
aatactagtatacaaacataatacaccaaacatagtaagggt |
28281950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 28303021 - 28302978
Alignment:
| Q |
11 |
aatactagtatacaaacataatacaccaaacatggtgagggtca |
54 |
Q |
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| T |
28303021 |
aatactagtatacaagcataatacaccaaacatagtcagggtca |
28302978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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