View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_high_1 (Length: 687)
Name: NF3131_high_1
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 53 - 452
Target Start/End: Complemental strand, 15746358 - 15745959
Alignment:
| Q |
53 |
aaagaaaataaattaaaccatttcaatagataaattcgtagatcccaaactattggttttatgtttttgatgttagtgtgatttagnnnnnnnnnnnnaa |
152 |
Q |
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| T |
15746358 |
aaagaaaataaattaaaccatttcaatagataaattcgtaaatcccaaactattggttttatgttttttatgttagtgtgatttagtttttttttattaa |
15746259 |
T |
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| Q |
153 |
ttctaaccatgcctaatgtataacatgcttcaacattccctgcttttgcaaactgtttgagaaatctctatgcagattcacaccagtttttggctctaat |
252 |
Q |
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| T |
15746258 |
ttctaaccatgcctaatgtataacatgcttgaacattccctgcttttgcacacaattagagaaatctctgtgcagattcacaccagtttttggctctaat |
15746159 |
T |
|
| Q |
253 |
ggagaaagttgttggagaggctttcgataatacaagagaattaagtgctaaactttttaatctcttagacatgttccacaaaaatcatcaaattaatcaa |
352 |
Q |
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| T |
15746158 |
ggagaaagttgttggagaggctttcgataatacaagagaattaagtgctaaactttttaatctcttagacatgttccacaaaaatcatcaaattaatcaa |
15746059 |
T |
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| Q |
353 |
tgactctaacaggagaatcatcaaattgaatgggtctataatttcgatggagaaagaaaaataaaaggaaggtgatgatgaaggtgaatcaatttcttga |
452 |
Q |
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| T |
15746058 |
tgactctaacaggagaatcatcaaattgaatgggtctgtaatttcgatggagaaagaaaaataaaaggaaggtgatgatgaaggtgaatcaatttcttga |
15745959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 517 - 627
Target Start/End: Complemental strand, 15745894 - 15745784
Alignment:
| Q |
517 |
gattctgcaattctgaattgggtattgtgttgttgtttctctattgaataaatgagaactggattttgtgttgttgttttgggttgatgttattaatcta |
616 |
Q |
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| T |
15745894 |
gattctgcaattttgaattgggtattgtgttgttgtttctctattgaataaatgagaactggattttgtgttattgttttgggttgatgttattaatctg |
15745795 |
T |
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| Q |
617 |
caagcgggctc |
627 |
Q |
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| T |
15745794 |
caagcgggctc |
15745784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 648 - 680
Target Start/End: Complemental strand, 15743678 - 15743646
Alignment:
| Q |
648 |
gttatggatagaaatcaatggtgatgatgatgt |
680 |
Q |
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| T |
15743678 |
gttatggatagaaatcaatggtgatgatgatgt |
15743646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 155 - 349
Target Start/End: Original strand, 34683970 - 34684164
Alignment:
| Q |
155 |
ctaaccatgcctaatgtataacatgcttcaacattccctgcttttgcaaactgtttgagaaatctctatgcagattcacaccagtttttggctctaatgg |
254 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34683970 |
ctaaccatgcctaaagtataacatgcttcaacattccctgcctctgcacactgtttgagaaatctctgtgcagattcacaccagtttttggctctaatgg |
34684069 |
T |
|
| Q |
255 |
agaaagttgttggagaggctttcgataatacaagagaattaagtgctaaactttttaatctcttagacatgttccacaaaaatcatcaaattaat |
349 |
Q |
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| T |
34684070 |
agaaagttcttggagaggctttggataacacaagagaattaagtgctaatgtttttaatctcttagacctgttccacaaaaatcatcaaattaat |
34684164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 643 - 680
Target Start/End: Original strand, 42878540 - 42878577
Alignment:
| Q |
643 |
gggttgttatggatagaaatcaatggtgatgatgatgt |
680 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |
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| T |
42878540 |
gggttgttattgatagaaattaatggtgatgatgatgt |
42878577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 643 - 680
Target Start/End: Complemental strand, 1009593 - 1009556
Alignment:
| Q |
643 |
gggttgttatggatagaaatcaatggtgatgatgatgt |
680 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||| |
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| T |
1009593 |
gggttgttattgatagaaattaatggtgatgatgatgt |
1009556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 643 - 680
Target Start/End: Original strand, 8523456 - 8523493
Alignment:
| Q |
643 |
gggttgttatggatagaaatcaatggtgatgatgatgt |
680 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |
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| T |
8523456 |
gggttgttattgatagaaattaatggtgatgatgatgt |
8523493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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