View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_high_10 (Length: 237)
Name: NF3131_high_10
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 48900480 - 48900262
Alignment:
| Q |
17 |
aattagtgttactgatcaagttttgcgagttttttctcatgatgattaattaatttgagaatcttaaattcaattgatacttaattgtttgcttctgcat |
116 |
Q |
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| T |
48900480 |
aattagtgttactgatcaagttttgcgagttttttc--atgatgattaactaatttgagaatcttaaattcaattgatacttaattgtttgcttctgcat |
48900383 |
T |
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| Q |
117 |
atgcttgattactgtgtaagctaaacctaagcctgtataattatctcaaataatatagttcgtgtaaaataatccaattcttgaaatttttattacacgc |
216 |
Q |
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| T |
48900382 |
attcttgattactgtgtaagctaaacctaagcctgtataattatctcaaataatatagttcgtgtaaaataatccaattcttgaaatttttattacacac |
48900283 |
T |
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| Q |
217 |
atgattctatgttttgctatc |
237 |
Q |
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||||||||||||||||||||| |
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| T |
48900282 |
atgattctatgttttgctatc |
48900262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 11232116 - 11232249
Alignment:
| Q |
17 |
aattagtgttactgatcaagttttgcgagttttttctcatgatgattaattaatttgagaatcttaaattcaattgatacttaattgtttgcttctgcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11232116 |
aattagtgttactgatcaagttttgcgagttttttc--atgatgattaactaatttgagaatcttaaattcaattgatacttaattgtttgcttctgcat |
11232213 |
T |
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| Q |
117 |
atgcttgattactgtgtaagctaaacctaagcctgt |
152 |
Q |
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| T |
11232214 |
atgattgattactgtgtgaactaaacccaagcctgt |
11232249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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