View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3131_high_11 (Length: 237)

Name: NF3131_high_11
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3131_high_11
NF3131_high_11
[»] chr4 (4 HSPs)
chr4 (1-222)||(25584134-25584355)
chr4 (16-222)||(25588975-25589181)
chr4 (16-222)||(25598627-25598833)
chr4 (82-222)||(48465855-48465994)
[»] chr5 (1 HSPs)
chr5 (124-222)||(42076643-42076741)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25584355 - 25584134
Alignment:
Q  1 caagtagtacctccaacaagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatatgggtccttggggacagaagaggt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25584355 caagtagtacctccgacaagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatataggtccttggggacagaagaggt 25584256  T
Q  101 tgtcaagttcaggaagctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25584255 tgtcaagttcaggaagctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccagg 25584156  T
Q  201 aaagtgaaaagtggcagcattt 222  Q
    |||||||||||| |||||||||    
T  25584155 aaagtgaaaagtagcagcattt 25584134  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 25589181 - 25588975
Alignment:
Q  16 acaagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatatgggtccttggggacagaagaggttgtcaagttcaggaa 115  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||    
T  25589181 acaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaa 25589082  T
Q  116 -gctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccaggaaagtgaaaagtgg 214  Q
     |||  |  ||||||||| |||||||||||  |||||||||| |||||| ||| | |||||| |||||||||||||| ||||| |||||||||||  |||    
T  25589081 tgct-agacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaagctgg 25588983  T
Q  215 cagcattt 222  Q
    ||||||||    
T  25588982 cagcattt 25588975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 25598833 - 25598627
Alignment:
Q  16 acaagaaaccatgtctctgatgaaccaaaaagtttggatgcttctgtttgtgcttctaatatgggtccttggggacagaagaggttgtcaagttcaggaa 115  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||    
T  25598833 acaagaaaccatgtctctgatgatccgaacagtttggatgcttctctttgtgcttctaatatgggcccttggggacaaaagaggttgtcaagctctggaa 25598734  T
Q  116 -gctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccaggaaagtgaaaagtgg 214  Q
     |||  |  ||||||||| |||||||||||  |||||||||| |||||| ||| | |||||| |||||||||||||| ||||| |||||||||||  |||    
T  25598733 tgct-agacaaatcatgagcatatggtcttactccaatgagttgagtcaacgaagaaggagcggcatggcctctgttgtgtcctggaaagtgaaagctgg 25598635  T
Q  215 cagcattt 222  Q
    ||||||||    
T  25598634 cagcattt 25598627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 48465994 - 48465855
Alignment:
Q  82 ccttggggacagaagaggttgtcaagttcaggaa-gctcgggtaaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagca 180  Q
    ||||||||||| ||||||||||||||||| |||| ||| ||  ||||||||| ||||| ||||| | ||||||||| |  |||  || | |||||| |||    
T  48465994 ccttggggacaaaagaggttgtcaagttccggaatgct-ggacaaatcatgagcatattgtcttat-ccaatgagttggatcaatgaagaaggagcggca 48465897  T
Q  181 tggcctctgttatgtccaggaaagtgaaaagtggcagcattt 222  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  48465896 tggcctctgtcgtgtccaggaaagtgaaaactggcagcattt 48465855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 42076741 - 42076643
Alignment:
Q  124 aaatcatgaacatatggtcttcttccaatgagtcgagtcatcgaggcaggagcagcatggcctctgttatgtccaggaaagtgaaaagtggcagcattt 222  Q
    ||||||||| ||||| ||||| ||||||||||| | ||||  || | |||||| |||||||||||||| |||||| ||||||||||| |||||||||||    
T  42076741 aaatcatgagcatatagtcttattccaatgagttgggtcaatgaagaaggagcggcatggcctctgttgtgtccacgaaagtgaaaactggcagcattt 42076643  T

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