View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_high_12 (Length: 237)
Name: NF3131_high_12
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25584744 - 25584510
Alignment:
| Q |
1 |
gaatatctaatatcattttcgtgtacagtaagaaaatcatgcaatcaggaaaaactcatcttgtgtgttagagttggaaattatatttagattgtgtttt |
100 |
Q |
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| T |
25584744 |
gaatatctaatatcattttcgtgtacagtaagaaaatcatgcaatcaggaaaaactcatcttgtgt--tagagttggaaattatatttagattgtgtttt |
25584647 |
T |
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| Q |
101 |
gaatgaatacgacaatcatgtaacatatcaactgctacgctagtatgtcaatttattttatcaccaatttttagagaatgtagccaaattgtgatagtgt |
200 |
Q |
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| T |
25584646 |
gaatgaatacgacaatcatgtaacatatcaactgctacgctagcatgtcaatttattttatcacaaatttttagagaatgtagccaaattgtgatagtgt |
25584547 |
T |
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| Q |
201 |
ataacaattgaatcacctgtaatggagtgataccacc |
237 |
Q |
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|||||||||||||||||||||||| |||| |||||| |
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| T |
25584546 |
gtaacaattgaatcacctgtaatggcgtgacaccacc |
25584510 |
T |
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