View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_high_4 (Length: 503)
Name: NF3131_high_4
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 43085330 - 43085599
Alignment:
| Q |
19 |
tactcgatttgagttgattcccaaataagtgtatgtg--tattataatctaattgattatcaggcatgcaatcagatttttcagcagataaaacaggtaa |
116 |
Q |
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| T |
43085330 |
tactcgatttgagttgattcccaaataagtgtatgtgcgtattataatctaattgattatcaggcatgcaatcagatttttcagcagataaaacagataa |
43085429 |
T |
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| Q |
117 |
aataaaccagtgatcaacattaaaatactagaaacaacgaaatttcgttaccatgtcaacaacacaaaatagattggaaatgtacataattcaaaaatat |
216 |
Q |
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| T |
43085430 |
aataaaccagtgatcaacattaaaatacgagaaacaacgaaatttcgttaccatgtcaacaacacaaaatagattggaaatgtacataattcaaaaatat |
43085529 |
T |
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| Q |
217 |
aatcaatatcgttattgttatcacatacattcgtgtatttcaattatgtttgaactacatggatcaacat |
286 |
Q |
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| T |
43085530 |
aatcaatatcgttattgttatcacatacattcgtgtatgtcaattatgtttgaactacatggatcaacat |
43085599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 43085676 - 43085757
Alignment:
| Q |
363 |
gattataaccgtatatgaattcataacaacaattaatcaagcacataaatatcagcatgtttatcataatcgaataccaaat |
444 |
Q |
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| T |
43085676 |
gattataaccgtatatgaattcataacaacaattaatcaagcacataaatatcagcatgtttatcataatcgaataccaaat |
43085757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 43046688 - 43046736
Alignment:
| Q |
75 |
atcaggcatgcaatcagatttttcagcagataaaacaggtaaaataaac |
123 |
Q |
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| T |
43046688 |
atcaggcatgcaatcagattcttcagcagatataacaggtaaaacaaac |
43046736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 43085009 - 43085078
Alignment:
| Q |
76 |
tcaggcatgcaatcagatttttcagcagataaaacaggtaaaataaacc--agtgatcaacattaaaata |
143 |
Q |
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| T |
43085009 |
tcagacatgcaatcagatatttcagcagataaaacaggttaaacaaacctaagtaatcaacaataaaata |
43085078 |
T |
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