View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_high_8 (Length: 331)
Name: NF3131_high_8
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 42088010 - 42087710
Alignment:
| Q |
13 |
gagagtaacaacggactaatgatatatgtttactaagagtttaaacatcagatgaatcacatcnnnnnnnaatattcaatatttagttcagtcatattta |
112 |
Q |
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| T |
42088010 |
gagagtaacaacagactaatgatatatgtctactaagagattaaacatcacatgaatca--tctttctttaatatttaatatttagttcagtcatatttg |
42087913 |
T |
|
| Q |
113 |
aactcaacaaaattaaatgatagagttcaattgattaataaactttaattaagatcaaatcaattgagtattcaagttcaatctctagtttagacaatct |
212 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
42087912 |
aactcaacaaaattaaatgatggagttcaagtgattaataaacatcaattaagatcaaatcaattaagtattcaaattcaatctctagtttagacaatct |
42087813 |
T |
|
| Q |
213 |
ttaacaagattttacttaccacgtcataattaccgagtggttggttggtttaatgtatgcatttctacctttttgacccttgttcgaaatctgcatcatg |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
42087812 |
ttaacaaaattttacttaccacgtcataattaccgagtggttggttggtttaatgtatgcatttctacctttttgaccctggttcaaaatctgcatcatg |
42087713 |
T |
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| Q |
313 |
ttt |
315 |
Q |
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||| |
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| T |
42087712 |
ttt |
42087710 |
T |
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