View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_low_3 (Length: 529)
Name: NF3131_low_3
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Complemental strand, 21025221 - 21024711
Alignment:
| Q |
20 |
atgtaaactagctcttgtttgtttattacttggcaataaaaatattggtttcttttaataaatcaga--------------atagaacatacattattga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
21025221 |
atgtaaactagctcttgtttgtttattacttggcaataaaaatattggtttcttttaataaatcaaagaataattttgaaaatagaacatacattattga |
21025122 |
T |
|
| Q |
106 |
caaatttgatataacaactannnnnnnnattcgaatttcatttggcattcaggtatcccattaaatgtgtctttatttgtttagcgtcatctcgataata |
205 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
21025121 |
caaatttgatataacaactattttttt-attcgaatttcatttggcattcaggcatccgattaaatgtgtctttatttgtttagcgtcatctcgacaata |
21025023 |
T |
|
| Q |
206 |
agttgtccatcaaagataatttatttagattaaatgtcattcctcatgattcacagttttgcgtgggttgatgtggtagccatgaatcaacatatcattt |
305 |
Q |
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||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
21025022 |
agttgtccatcaaagataatttatttagactagatgacatccctcatgattcacagctttgcgtgagttgatgtggtagtcatgaatcaacatatcattt |
21024923 |
T |
|
| Q |
306 |
gtgtttagaatgtgataatttcagttctataatgtatttaatttgactctcatgtacttgttatttggaatgaaaggaacaaccgaatatttcacaataa |
405 |
Q |
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|| || || ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21024922 |
gttttcagcatgtgataatttcggttttataatgtatttaatttgactctcatgtacttgttatttggaatgaaaggaacaaccgaatatttcacaataa |
21024823 |
T |
|
| Q |
406 |
gaaaaactcaattgatcagtttctggataaaactaagttgcttttcttttttgtggttaaaagcaagatatgttaatgcttttggttatcaaagttggcg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
21024822 |
gaaaaactcaattgatcagtttctggataaaactaagttgc-tttcttttttgtggttgaaagcaaaatatgttgatgcttttggttatcaaagttggcg |
21024724 |
T |
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| Q |
506 |
cccgtgtcccttt |
518 |
Q |
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||||||||||||| |
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| T |
21024723 |
cccgtgtcccttt |
21024711 |
T |
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