View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3131_low_5 (Length: 469)
Name: NF3131_low_5
Description: NF3131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3131_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Original strand, 46734742 - 46735183
Alignment:
| Q |
19 |
atataatctttacattgcggcttcaggttgcaatttaaagctatataacaagttaatttcctatttagttacgctgtttgcataaaacaaaaa----ctc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| |
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| T |
46734742 |
atataatctttacattgcggcttcaggttgcaatttaaagctatataacaagttaatttcctatttagttacgctgcttgcataaaaaaaaaaaaaactc |
46734841 |
T |
|
| Q |
115 |
aagtcatactctagcttgctcttgaatannnnnnnnnnnnagatttctcactgaattgttatgtttaattttctagtgaaagtgttggactggggtgagg |
214 |
Q |
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|||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734842 |
aagtcatagtctaacttgctcttgaatattttttgtttttagatttctcactgaattgttatgtttaattttctagtgaaagtgttggactggggtgagg |
46734941 |
T |
|
| Q |
215 |
atggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734942 |
atggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagt |
46735041 |
T |
|
| Q |
315 |
ataaacttaatatccttcacactctcatttatttaaattcataattactaataaacttttgtatgcttatttttctcctttcctttatgatgtggaacta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735042 |
ataaacttaatatccttcacactctcatttatttaaattcatgattactaataaacttttgtatgcttatttttctcctttcctttatgatgtggaacta |
46735141 |
T |
|
| Q |
415 |
tagga-ttttattttttaaagcgtagttttgtaattgttcat |
455 |
Q |
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| T |
46735142 |
taggatttttattttttaaagcgtagttttgtaattgttcat |
46735183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 246 - 455
Target Start/End: Complemental strand, 19411404 - 19411190
Alignment:
| Q |
246 |
tttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataaacttaatatccttcacactctcattta |
345 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19411404 |
tttacgagcatcatttcggcaggaggttactgtgtagcaaaaacttgatcattcaaatgtcacaaaagtacaaacttaatatccttcacactctcattta |
19411305 |
T |
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| Q |
346 |
tttaaattcataattacta-ataaact--tttgtatgcttatttttctcctttcctttatgatgtggaactatagga-ttttat-tttttaaagcgtagt |
440 |
Q |
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||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||| || |||| |
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| T |
19411304 |
tttaaattcatgattactacttaaaataatttgtattcttatttttctcctttcctttatgaggtggagctgtaggatttttatatttttaacgcatagt |
19411205 |
T |
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| Q |
441 |
tttgtaattgttcat |
455 |
Q |
| |
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||| ||||||||||| |
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| T |
19411204 |
tttataattgttcat |
19411190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 984366 - 984492
Alignment:
| Q |
189 |
agtgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaa |
288 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| | || ||||| ||| |
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| T |
984366 |
agtgaaagtgttggattggggtgaggatggtgctgccaccgctgcagaaactgctgctttacgtgcatcttttaggcaggaggttgccgtctggcacaaa |
984465 |
T |
|
| Q |
289 |
cttgatcattcaaatgtcacaaaagta |
315 |
Q |
| |
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|| || ||| |||||||||| |||||| |
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|
| T |
984466 |
ctcgaccatccaaatgtcactaaagta |
984492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 37222641 - 37222765
Alignment:
| Q |
191 |
tgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaact |
290 |
Q |
| |
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||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||| ||| ||||||||||| | || ||| | ||||| |
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| T |
37222641 |
tgaaagtgttggattggggtgaggatggtgctgccaccgctgcggaaactgccgctttacgtgcatcctttaggcaggaggttgccgtctggtacaaact |
37222740 |
T |
|
| Q |
291 |
tgatcattcaaatgtcacaaaagta |
315 |
Q |
| |
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|| ||| |||||| ||| |||||| |
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| T |
37222741 |
cgaccatccaaatgccacgaaagta |
37222765 |
T |
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